Conserved Protein Domain Family
TraF_2

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pfam13729: TraF_2 
F plasmid transfer operon, TraF, protein
Statistics
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PSSM-Id: 493645
Aligned: 26 rows
Threshold Bit Score: 154.428
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015047639  49 INPANVGFDRQQisstsfsaG----RLHlSGGLEYGNVQELFDGYD-----ELSAWLKdndsgg-nnggggNPDQPPKPi 118 Simiduia agariv...
WP_011813609  46 QNPAGPIAASDR--------GvrmgVFAlGLSYELGDVADFSDDFE-----ALGEELE-------------DLERLLEEv 99  Halorhodospira ...
WP_013660164  46 YNPAAPFLMVNNkdgdrfrmGl---FGPmAFGYEFGQVDSLEEKID-----ELDETLDkele------------------ 99  Marinomonas med...
WP_015819298  46 TNPAHIGLAIREqen--vrfNf---LPAlSVYTEVGAVDNFVDDLD-----ELIDILDdpst------------------ 97  Teredinibacter ...
WP_011814678  77 GNPAGAAAADr--------vGvqfgLGSvGVGYELGPVDGLVDEID-----DIIDILDrddl------------------ 125 Halorhodospira ...
WP_016389362  50 gNPAAQAYDRSRmdqddgviG----GLHlGAGLEYGNVSELFDKVD-----DIADSLLsd---------sgLAEKNIYNi 111 Simiduia agariv...
WP_013908722  50 YNPALLGIHr---------yGt---QISiSAGVGIREV-NLVDHIDkladvGIESTIDeaiqyiednglavIGTGLSPE- 115 Thermodesulfata...
WP_012487601  46 LNPSLVA-SHGAkd----dfAl---VI--NAGALGSDKDDLIDGLD-----DLVDFTDyl---------qsATNL----- 96  Cellvibrio japo...
Q21EH4        56 YNPALLALHDGDedss-rdgRl---FVPiVILQASGAYSEAVDIADqdldgALSSAVDnf---------naNQDAASAGq 122 Saccharophagus ...
WP_015820228  55 YNPALLALNDESenrt-rdsRf---VFPnLVVQVDDSVEAVIDAADdnlqeNLERAVDgy---------nsSRSAEAAGe 121 Teredinibacter ...
WP_015047639 119 dpidpdleriieeFKAEATRIGAILAVIATEGyANt----dLGTD---LALVFNREWLG--GTWGLDVSYAGSASAVGFv 189 Simiduia agariv...
WP_011813609 100 esgdvdpdnaedeIESFQANVNEILDRIGEDGyLT------AGVTgqfVPFPFETTQDAlrGSLLIDLDYSLRGHISVLr 173 Halorhodospira ...
WP_013660164 100 ---------taedVDKALRDVNELISSMDENAtGKg----mFSSQiplFPMIYRSPQY---GAFMFDASLTGLVKGSFLa 163 Marinomonas med...
WP_015819298  98 ---------tddsVDEVLDRFNGLLVTMGEEGyLTt----kVGLSaplFPFYFRSRPLD--MVFSAELSFNGSVGMRVLd 162 Teredinibacter ...
WP_011814678 126 ---------gpseADDLIERTEGVLAQLGQDGwGKl----qFGGRpplAPLVVGSARSG--WSVALDAEATGHLGFSILd 190 Halorhodospira ...
WP_016389362 112 dfnnpdlnglvdaIDQEADRVDDLLASIGDSGyANa----tVNGQ---IPIVFAADVFG--GTLGVEYRYAATASAVALp 182 Simiduia agariv...
WP_013908722 116 -------------LQDKFKTITSELRAIGTKNgLQlmptasAGVQignFGFGVFGLSEGtaHAVIDPDHLDIIVKAEVTv 182 Thermodesulfata...
WP_012487601  97 -------------TEADADELKRLMANVDDKT-LGa----tFGAS---TVLAIPNSIIS--AALILKATGTVGLLANI-- 151 Cellvibrio japo...
Q21EH4       123 -------------VSAALTDLDGAIDDLANED-IGl----dNFIG---FNISEPGDREG--GAFFFGTRIMAGGRATV-- 177 Saccharophagus ...
WP_015820228 122 -------------VANRARQLETLLVDLGNQQ-IEg----eVVFG---LSVSEPSKFEG--GAFFISSRSISFADSTI-- 176 Teredinibacter ...
WP_015047639 190 e---------dlDFNAEQALTElqaaynlqpgdpatsfdlsggiilhidpnagtvrgefnnDSLLAIRAARETTVALNYS 260 Simiduia agariv...
WP_011813609 174 gedldlsiddqdDAGDALDTLD---------------------------------------GFGGYVRSAVTRTFTLGYG 214 Halorhodospira ...
WP_013660164 164 ------------EEAEIQGKSIq-------------------------------------tQSSVYVKDGADLNLSFGYS 194 Marinomonas med...
WP_015819298 163 dtlr---fddqnNKFST--------------------------------------------NTSAYVKSGLETKLAFGGS 195 Teredinibacter ...
WP_011814678 191 delr---fvretEQIQS--------------------------------------------NTAAYLKGGGILRLSAAPS 223 Halorhodospira ...
WP_016389362 183 e---------llNFDTQAALTAlqtafdpnnpqtsydltgg--vtlavdpltgdvaigfdnDSTLLTRAAKISEFGVSWS 251 Simiduia agariv...
WP_013908722 183 ngttqpiyvkydEEQNQLSLSDlqqyqass-----------------------leyaidngLTYLKLTGLAYFEIPVAYA 239 Thermodesulfata...
WP_012487601 152 ------------DDSDYELIDDrtntnf----------------------------dpedlQSSVIGRGVVVKELGVALA 191 Cellvibrio japo...
Q21EH4       178 ------------PEQDRAVVDRyqsamdiiaaggtladid----pelvdddgnlidpndslSSSVDIGAVALTEWGVAFA 241 Saccharophagus ...
WP_015820228 177 ------------PAADYALLADyinamdvlaaggsfadis----palldgngnlidpsdrfNSSANITAFNLLEWGVSLS 240 Teredinibacter ...
WP_015047639 261 RAFA--LG-DQqWFVGVRPKYVNMGLSGLITRIGDITDSEslf--ddIRDADFNNTGNLSLDAGVLWASDH---YTAGLA 332 Simiduia agariv...
WP_011813609 215 SAVYenRQ-GL-LFAGAQLKHHQVELSRMAVGFDDDPGSQls----dEFRENAETDSDLGVDLGVMWVSDR---YRAGAS 285 Halorhodospira ...
WP_013660164 195 KDIWanQY-GM-LVGGAKLHAHYLTLGKALLVLQEDD--DigdefsdSLEDNQESTFGVGLDVGAIWVAEN---YQLGLT 267 Marinomonas med...
WP_015819298 196 RAFYnlLD-GMdVYAGAKLNIIQMELSKQVIALQQMNGESiedvvedAYDENLKSSTNMSLDLGVSLVAES---FRLGAT 271 Teredinibacter ...
WP_011814678 224 LRVAewEG-GReLFVGARVSHYQAELSKAVVALAEDTNRDfgdivedEIDRQQETSSAVGLDLGVMYQTRF---FRAGGA 299 Halorhodospira ...
WP_016389362 252 KGLN--MS-GGkLFFGVTPKYTSMGLSNVASRVGDITDAEelf--ddIRDASFKTEGKIGLDAGLLWVAQN---YRLGVT 323 Simiduia agariv...
WP_013908722 240 HHIKtqLGd---VYLGGAVKLMPGVTFDGQIKV-DTESGDis----sELKDADKRDTSWGVDLGILYQPRFvkgLSIGLV 311 Thermodesulfata...
WP_012487601 192 KNVS--PSdDYqLLVGITPKRIEVDTIVYEATVADYDEDDl------dADDYTITGKTSGLDAGITYIKGN---LRYGLT 260 Cellvibrio japo...
Q21EH4       242 KEID--VM-GLpVSFGATPKAVRVDVYRES---RGYSDGDl------nFDDNYKSHYTINGDIGVAVEFAKh--YRIGMA 307 Saccharophagus ...
WP_015820228 241 RKFE--FF-GQsVALGVTPKVLNIYAISDS---TDFGDDDl------dFDDDEQSYLSVNGDVGVLFELFDh--YRVGVA 306 Teredinibacter ...
WP_015047639 333 VTDIFEPTYDFNFVGSTGFnnpv----------------vvaaFERLQTFKQARRWRLDSSYisDNKQWAASVSVD 392 Simiduia agarivorans
WP_011813609 286 VANLIEPTFDYPAVEDDDTfdaaa---------------ergeIDRDESYRMERQLSVEGAVhtDDGRWLLGGSLD 346 Halorhodospira halo...
WP_013660164 268 ATNLNEPEFDYGIIGQNCSsltgtqidncv---vaaqfasrgeIASSETHVMERQVTIDGAValSDKQWTLATSYD 340 Marinomonas mediter...
WP_015819298 272 LSDINEPSFDYGAVGVNCSdyeessisrsncdtatyfvqeageIVSQETYTRHALLTLDGMYrlGSSLFLSGELet 347 Teredinibacter turn...
WP_011814678 300 WKNINEPTFDFPAVGTDCSgeadpdlqan----cltaanfsdrITREEAFRLNEQVTLEGALhdPAQRLVLAASYD 371 Halorhodospira halo...
WP_016389362 324 GTNLLEPSFKFPALDTSGFtnpa----------------itaqLAALETYTLERQFTLEGGLftADHQWSLNIAYD 383 Simiduia agarivorans
WP_013908722 312 GKNLNTPEFDTAT---------------------------------GDTYKVDPQFRLGLAY--DFSAFTFALDAD 352 Thermodesulfatator ...
WP_012487601 261 ISNLSSKKFKSIA--------------------------------EGETFELATRTTAAIGY--TGDWYKAEASVD 302 Cellvibrio japonicus
Q21EH4       308 IKDVVPHDFQSTS---------------------------------VDEVTLRPRSRMGVAY--TNSLFQIGVDMD 348 Saccharophagus degr...
WP_015820228 307 AKDLVPEKFTTNS---------------------------------GAELQLKTRSRLGLGY--VRERFSLGLDMD 347 Teredinibacter turn...
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