Conserved Protein Domain Family
TraF_2

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pfam13729: TraF_2 (This model is not part of the current CDD release)
F plasmid transfer operon, TraF, protein
Statistics
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PSSM-Id: 493645
Aligned: 26 rows
Threshold Bit Score: 154.428
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015047639   49 INPANVGFDRQQisstsfsaG----RLHlSGGLEYGNVQELFDGYD-----ELSAWLKdndsgg-nnggggNPDQPPKPi 118 Simiduia agari...
WP_011813609   46 QNPAGPIAASDR--------GvrmgVFAlGLSYELGDVADFSDDFE-----ALGEELE-------------DLERLLEEv 99  Halorhodospira...
WP_013660164   46 YNPAAPFLMVNNkdgdrfrmGl---FGPmAFGYEFGQVDSLEEKID-----ELDETLDkele------------------ 99  Marinomonas me...
WP_015819298   46 TNPAHIGLAIREqen--vrfNf---LPAlSVYTEVGAVDNFVDDLD-----ELIDILDdpst------------------ 97  Teredinibacter...
jgi:Hhal_1892  77 GNPAGAAAADr--------vGvqfgLGSvGVGYELGPVDGLVDEID-----DIIDILDrddl------------------ 125
WP_016389362   50 gNPAAQAYDRSRmdqddgviG----GLHlGAGLEYGNVSELFDKVD-----DIADSLLsd---------sgLAEKNIYNi 111 Simiduia agari...
WP_013908722   50 YNPALLGIHr---------yGt---QISiSAGVGIREV-NLVDHIDkladvGIESTIDeaiqyiednglavIGTGLSPE- 115 Thermodesulfat...
WP_012487601   46 LNPSLVA-SHGAkd----dfAl---VI--NAGALGSDKDDLIDGLD-----DLVDFTDyl---------qsATNL----- 96  Cellvibrio jap...
Q21EH4         56 YNPALLALHDGDedss-rdgRl---FVPiVILQASGAYSEAVDIADqdldgALSSAVDnf---------naNQDAASAGq 122 Saccharophagus...
WP_015820228   55 YNPALLALNDESenrt-rdsRf---VFPnLVVQVDDSVEAVIDAADdnlqeNLERAVDgy---------nsSRSAEAAGe 121 Teredinibacter...
WP_015047639  119 dpidpdleriieeFKAEATRIGAILAVIATEGyANt----dLGTD---LALVFNREWLG--GTWGLDVSYAGSASAVGFv 189 Simiduia agari...
WP_011813609  100 esgdvdpdnaedeIESFQANVNEILDRIGEDGyLT------AGVTgqfVPFPFETTQDAlrGSLLIDLDYSLRGHISVLr 173 Halorhodospira...
WP_013660164  100 ---------taedVDKALRDVNELISSMDENAtGKg----mFSSQiplFPMIYRSPQY---GAFMFDASLTGLVKGSFLa 163 Marinomonas me...
WP_015819298   98 ---------tddsVDEVLDRFNGLLVTMGEEGyLTt----kVGLSaplFPFYFRSRPLD--MVFSAELSFNGSVGMRVLd 162 Teredinibacter...
jgi:Hhal_1892 126 ---------gpseADDLIERTEGVLAQLGQDGwGKl----qFGGRpplAPLVVGSARSG--WSVALDAEATGHLGFSILd 190
WP_016389362  112 dfnnpdlnglvdaIDQEADRVDDLLASIGDSGyANa----tVNGQ---IPIVFAADVFG--GTLGVEYRYAATASAVALp 182 Simiduia agari...
WP_013908722  116 -------------LQDKFKTITSELRAIGTKNgLQlmptasAGVQignFGFGVFGLSEGtaHAVIDPDHLDIIVKAEVTv 182 Thermodesulfat...
WP_012487601   97 -------------TEADADELKRLMANVDDKT-LGa----tFGAS---TVLAIPNSIIS--AALILKATGTVGLLANI-- 151 Cellvibrio jap...
Q21EH4        123 -------------VSAALTDLDGAIDDLANED-IGl----dNFIG---FNISEPGDREG--GAFFFGTRIMAGGRATV-- 177 Saccharophagus...
WP_015820228  122 -------------VANRARQLETLLVDLGNQQ-IEg----eVVFG---LSVSEPSKFEG--GAFFISSRSISFADSTI-- 176 Teredinibacter...
WP_015047639  190 e---------dlDFNAEQALTElqaaynlqpgdpatsfdlsggiilhidpnagtvrgefnnDSLLAIRAARETTVALNYS 260 Simiduia agari...
WP_011813609  174 gedldlsiddqdDAGDALDTLD---------------------------------------GFGGYVRSAVTRTFTLGYG 214 Halorhodospira...
WP_013660164  164 ------------EEAEIQGKSIq-------------------------------------tQSSVYVKDGADLNLSFGYS 194 Marinomonas me...
WP_015819298  163 dtlr---fddqnNKFST--------------------------------------------NTSAYVKSGLETKLAFGGS 195 Teredinibacter...
jgi:Hhal_1892 191 delr---fvretEQIQS--------------------------------------------NTAAYLKGGGILRLSAAPS 223
WP_016389362  183 e---------llNFDTQAALTAlqtafdpnnpqtsydltgg--vtlavdpltgdvaigfdnDSTLLTRAAKISEFGVSWS 251 Simiduia agari...
WP_013908722  183 ngttqpiyvkydEEQNQLSLSDlqqyqass-----------------------leyaidngLTYLKLTGLAYFEIPVAYA 239 Thermodesulfat...
WP_012487601  152 ------------DDSDYELIDDrtntnf----------------------------dpedlQSSVIGRGVVVKELGVALA 191 Cellvibrio jap...
Q21EH4        178 ------------PEQDRAVVDRyqsamdiiaaggtladid----pelvdddgnlidpndslSSSVDIGAVALTEWGVAFA 241 Saccharophagus...
WP_015820228  177 ------------PAADYALLADyinamdvlaaggsfadis----palldgngnlidpsdrfNSSANITAFNLLEWGVSLS 240 Teredinibacter...
WP_015047639  261 RAFA--LG-DQqWFVGVRPKYVNMGLSGLITRIGDITDSEslf--ddIRDADFNNTGNLSLDAGVLWASDH---YTAGLA 332 Simiduia agari...
WP_011813609  215 SAVYenRQ-GL-LFAGAQLKHHQVELSRMAVGFDDDPGSQls----dEFRENAETDSDLGVDLGVMWVSDR---YRAGAS 285 Halorhodospira...
WP_013660164  195 KDIWanQY-GM-LVGGAKLHAHYLTLGKALLVLQEDD--DigdefsdSLEDNQESTFGVGLDVGAIWVAEN---YQLGLT 267 Marinomonas me...
WP_015819298  196 RAFYnlLD-GMdVYAGAKLNIIQMELSKQVIALQQMNGESiedvvedAYDENLKSSTNMSLDLGVSLVAES---FRLGAT 271 Teredinibacter...
jgi:Hhal_1892 224 LRVAewEG-GReLFVGARVSHYQAELSKAVVALAEDTNRDfgdivedEIDRQQETSSAVGLDLGVMYQTRF---FRAGGA 299
WP_016389362  252 KGLN--MS-GGkLFFGVTPKYTSMGLSNVASRVGDITDAEelf--ddIRDASFKTEGKIGLDAGLLWVAQN---YRLGVT 323 Simiduia agari...
WP_013908722  240 HHIKtqLGd---VYLGGAVKLMPGVTFDGQIKV-DTESGDis----sELKDADKRDTSWGVDLGILYQPRFvkgLSIGLV 311 Thermodesulfat...
WP_012487601  192 KNVS--PSdDYqLLVGITPKRIEVDTIVYEATVADYDEDDl------dADDYTITGKTSGLDAGITYIKGN---LRYGLT 260 Cellvibrio jap...
Q21EH4        242 KEID--VM-GLpVSFGATPKAVRVDVYRES---RGYSDGDl------nFDDNYKSHYTINGDIGVAVEFAKh--YRIGMA 307 Saccharophagus...
WP_015820228  241 RKFE--FF-GQsVALGVTPKVLNIYAISDS---TDFGDDDl------dFDDDEQSYLSVNGDVGVLFELFDh--YRVGVA 306 Teredinibacter...
WP_015047639  333 VTDIFEPTYDFNFVGSTGFnnpv----------------vvaaFERLQTFKQARRWRLDSSYisDNKQWAASVSVD 392 Simiduia agarivorans
WP_011813609  286 VANLIEPTFDYPAVEDDDTfdaaa---------------ergeIDRDESYRMERQLSVEGAVhtDDGRWLLGGSLD 346 Halorhodospira hal...
WP_013660164  268 ATNLNEPEFDYGIIGQNCSsltgtqidncv---vaaqfasrgeIASSETHVMERQVTIDGAValSDKQWTLATSYD 340 Marinomonas medite...
WP_015819298  272 LSDINEPSFDYGAVGVNCSdyeessisrsncdtatyfvqeageIVSQETYTRHALLTLDGMYrlGSSLFLSGELet 347 Teredinibacter tur...
jgi:Hhal_1892 300 WKNINEPTFDFPAVGTDCSgeadpdlqan----cltaanfsdrITREEAFRLNEQVTLEGALhdPAQRLVLAASYD 371
WP_016389362  324 GTNLLEPSFKFPALDTSGFtnpa----------------itaqLAALETYTLERQFTLEGGLftADHQWSLNIAYD 383 Simiduia agarivorans
WP_013908722  312 GKNLNTPEFDTAT---------------------------------GDTYKVDPQFRLGLAY--DFSAFTFALDAD 352 Thermodesulfatator...
WP_012487601  261 ISNLSSKKFKSIA--------------------------------EGETFELATRTTAAIGY--TGDWYKAEASVD 302 Cellvibrio japonicus
Q21EH4        308 IKDVVPHDFQSTS---------------------------------VDEVTLRPRSRMGVAY--TNSLFQIGVDMD 348 Saccharophagus deg...
WP_015820228  307 AKDLVPEKFTTNS---------------------------------GAELQLKTRSRLGLGY--VRERFSLGLDMD 347 Teredinibacter tur...
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