Conserved Protein Domain Family
TraF

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pfam13728: TraF (This model is not part of the current CDD release)
F plasmid transfer operon protein
TraF protein undergoes proteolytic processing associated with export. The 19 amino acids at the amino terminus of the polypeptides appear to constitute a typical membrane leader peptide - not included in this family, while the remainder of the molecule is predicted to be primarily hydrophilic in character. F plasmid TraF and TraH are required for F pilus assembly and F plasmid transfer, and they are both localized to the outer membrane in the presence of the complete F transfer region, especially TraV, the putative anchor.
Statistics
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PSSM-Id: 493644
Aligned: 33 rows
Threshold Bit Score: 164.018
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012675188  23 GWFFYEDPEKPkketvkkvekkiekpkekkkekpkkvekpkpkpqPQQVVKKKKEDKFVFPVRPDAPQPVkeflLNPNRE 102 Persephonella m...
WP_013908531  35 GWYAYEKYKKtqetkqnsger--------------pvrqpkihwpTYEEVLKMKPSDLKKWLQKATEEAV----ADPSEK 96  Thermodesulfata...
WP_013681658  30 GWFWYKNPPkkeknkdknk-----------------eekftmktyTYKQLWNMYPDKFQKLLKYALRQAV----QNPTPQ 88  Hippea maritima
Q2LU01        51 GWWWYEKIPLEkrdrdekvedg-------------kkrsprlsdyTMEELWNMYPDDFQAVLMAFQKKAV----QVPSEN 113 Syntrophus acid...
WP_013833514  27 GYWWY--APptrpeepaapd---------------pdalikpvipPMGELATWTPPRIHKLIEQQRDYAA----TVLTVD 85  Novosphingobium
WP_014076316  34 GYWWY-ETPksgaeeevlq-----------------etvpkpvipPMVELAKWSPPRIAKLIVEQRDYAA----TVLTID 91  Sphingobium sp....
WP_012468339  28 GWWWYQKEPEKqaekqekkkkp-------------pkstpslkdySYEQVWEMHPDQFQEFAEVLKKKAV----QKPSEE 90  Trichlorobacter...
WP_011733907  30 GWWWYDREPPKqdeekkeekpads--------pkkgrkykslkgiTEEKMWNMDPQDLGELWDDMRARAF----RKPTES 97  Pelobacter prop...
Q93GM5        25 GWQWYNDPVKLpdpkttdksa----------------------qvrqepdimQKLSALQTATKRALYEAI----LYPGVD 78  Salmonella ente...
1_pfamImport   1 GWQWYNEKLKPrdedrkavpa----------------------apppqmdilEKLATLQAATKRSLYEAI----LYPSSE 54 
WP_012675188 103 TAEKFLAWQYQYFQHLQKIGFALREAYLAKGPQVYPIRgYPESELASKLYfNDYRKHLIAKAIKRLKNRFGLIIFYSGKC 182 Persephonella m...
WP_013908531  97 NVTRWAIYMKAAREKSVRFAGSLSFVLLKHPELSYAPD-FPITYQASRAL-SRARYLKINSFLQKIRDRFALILLVSSRS 174 Thermodesulfata...
WP_013681658  89 NVKQYLILQDIARRKAYAFSNVVGYVTQTNPNLSLYKD-YPENSPGIRMR-TGLMNYDVDKTLKSNRDEYALLFFYKPGC 166 Hippea maritima
Q2LU01       114 NVREYYVVQDIARRKSLAFANVSAAVMQKYPDLSVAAD-YPITAPGRNAE-VSQRTDEIKSRIRSAREEFALIYFSSAGC 191 Syntrophus acid...
WP_013833514  86 AVADFWRLEDFARRKARAFAGLTQIAMLQHPELNSKSA-NPMVGDARSEL-AAWKDQVRRSYLRAHSNEFALVMFSRATC 163 Novosphingobium
WP_014076316  92 AVADFWRLQDFARRKARAFAGVTQLAMLTHPELNAKAA-NPMVGEARDAL-GAQKDQVRRQYLRAHAGEFALVMFARESC 169 Sphingobium sp....
WP_012468339  91 NVKEYFEVQEIARKKALAFSNVAQFVWQKYPELTTKKD-YPITTPGNLAR-ISQINEERQRILRDNRDDFALIYFQRPDC 168 Trichlorobacter...
WP_011733907  98 NVRDFWRVNEVTRKKAYAFTSASDFTWQRNPELTTKGD-YPISTPGRSAQ-VAMSEAEKRQTLANNQHNYALVMFSKPGC 175 Pelobacter prop...
Q93GM5        79 NFVKYFRLQNYWTQQAGLFSMSAKKAMLAHPELDYNLQ-YSHYNGTVRNQ-LAADQAQQRQAISKLAEHYGIMFFYRGQD 156 Salmonella ente...
1_pfamImport  55 NFVKYFRLQNYWTQQAGLFSMSAKKAMLENPELDYNLQ-YSHYNGTVKNQ-LAADYAEQRQAISTLAQHYGVMFFYRGRE 132
WP_012675188 183 KVCQQELPILLGLRQIYGITMRAVNVDGNMID-LPIKQVYNPQLAkQYGITRVPTVVAVLEKK--DGTVkqsVVGVGLMT 259 Persephonella m...
WP_013908531 175 PLSEPAQKICRKFADETGWKLVVVDADSRPD--IAK----------RLGAKYVPQAFIISRDPgiSPL----PVMAGAEA 238 Thermodesulfata...
WP_013681658 167 QYCEIQSQILRYLQDEDGWEIMPININQRYD--VAA----------RFNVKTVPEIILIHKGS--PQWI---PVAAGVIA 229 Hippea maritima
Q2LU01       192 PYCAEEGSILSRFVEKYGWEIREIDIEREAA--VSS----------VFGIETTPTLLLIYRGS--ADHI---TVSAGVAS 254 Syntrophus acid...
WP_013833514 164 GYCRVEWPIVQRFQDEMGWQVTLMDIDKRPD--LGQ----------RFGVEVTPTTMIIRRGS--KQRM---VIAAGVET 226 Novosphingobium
WP_014076316 170 GYCKVQWPIVQRFKDDMGWQVSLMDLDRRPD--LKQ----------RFGVEVTPTTMVIRRGS--PQRM---VIAAGVES 232 Sphingobium sp....
WP_012468339 169 SYCDEQSRILDWFTNETGWTVKKVNISENPG--LAA----------KFSVEITPTLILIQKGN--QDYL---PVSAGVIS 231 Trichlorobacter...
WP_011733907 176 RYCSEQEGILRWFTQSTGWTVKTVDISQNPS--MAS----------RFGVTITPTIILIQKGN--QDFF---PVTAGVAS 238 Pelobacter prop...
Q93GM5       157 PIDGQLAQVINGFRATYGLSVIPVTVDGVINPmLPDTRPDQGQAQ-RLGVKYFPAMMLVDPKQ--GSVR---PLSYGFIT 230 Salmonella ente...
1_pfamImport 133 AIDGQLVQVIKNFRETYGLSVIPVSVDGVINPmLPDSRTDQGQAE-QLGVKFFPAMMLVNPKS--GQVK---PLSYGFIS 206
WP_012675188 260 ADTILSMIT 268 Persephonella marina
WP_013908531 239 LPVLRQNVY 247 Thermodesulfatator indicus
WP_013681658 230 LNNIKRNIY 238 Hippea maritima
Q2LU01       255 LAELEEKLY 263 Syntrophus aciditrophicus SB
WP_013833514 227 YPNLAQMAY 235 Novosphingobium
WP_014076316 233 YPNLAQMAY 241 Sphingobium sp. SYK-6
WP_012468339 232 ADEIEDKAY 240 Trichlorobacter lovleyi
WP_011733907 239 ADEITERTY 247 Pelobacter propionicus
Q93GM5       231 QDDLAKQFL 239 Salmonella enterica subsp. enterica serovar Typhimurium
1_pfamImport 207 QDDLAKQFL 215
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