5MG3


Conserved Protein Domain Family
SecD-TM1

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pfam13721: SecD-TM1 (This model is not part of the current CDD release)
SecD export protein N-terminal TM region
This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Statistics
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PSSM-Id: 520881
Aligned: 102 rows
Threshold Bit Score: 78.7231
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5MG3_D         9 LNRYPLWKY-VMLIVVIVIGLLYALPNLFGEDPAVQITGARG-VAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFD 86  Escherichia coli
6_pfamImport   1 MTRYPWWKY-LIILAVVLPSFLYALPNFFGWHAAVEVRAPVGtQLPPVATMQ---GWLASAHIPVTRTVTDASGITFFFP 76 
E0SKT0         7 frKPSAWR--LLLLLLPLVVLLSMSSRRLPDEVMLHITPLHQgAPLPDGF--YIYQRLNERGIAIKSITPENDSIIVRLS 82  Dickeya dadanti...
Q7CPR5         7 taRQLIW---ISAFLLMLTILMMTWSTLRQQESTLAIRAVNQgASMPDGF--SVLHHLDANGIHFKSITPKNDMLLITFD 81  Salmonella ente...
1_pfamImport   1 --RQLAW---TTSFLVLMSVLFLVWSTIRQQESTLAIRAIHQgVSMPDGF--SIWHHLDANGIRFKSITPQNDALLITFD 73 
9_pfamImport   1 MNHYTIWKY-VVLLTAIVLLALSALPSWYGDKPALIIDQPKAdLSIE-----QVSLELKHHNIPIREITETGNQMVVLLE 74 
Q9KLQ0        14 INHYSAWKY-VVLVTTIIILTLSAIPTWYGEQPSIQLQSKDAtSVLRNVP--ELTQLLNKQNIQADEITQQGDNTTLVFA 90  Vibrio cholerae
Q6LK07        17 FNHYSAWKY-IVLVVTVLVMLLSAIPTWYGEDAAVQISAKKApAPSVL----AIQRQLESSGITVKRIDQQADKTVVVLE 91  Photobacterium ...
Q5E6H6        10 LNHYSKWKY-IVLITTLVILLLSAIPTWYGEDAAVQITNKDGhIPSIV----SLQNTLTEQGINVKRIEQKGDKTIVILK 84  Aliivibrio fisc...
A4THL5         7 rfgrPLWHYlVLPVVLLLLAVILLTPMIVQTESTLKIRPNQQgLSLPDGF--YLYQHLNGRGIHIKSIIPENDSLVVSLE 84  Yersinia pestis...
5MG3_D        87 STDTQLRAREALMGVMG-DKYVVAL 110 Escherichia coli
6_pfamImport  77 NDNAQGLAETLLQNRLP-RNAQV-- 98 
E0SKT0        83 SPEQSGAAREILSTALP-YAIVIAQ 106 Dickeya dadantii 3937
Q7CPR5        82 SPAQSAAAKTVLDQTLP-HGYVVAQ 105 Salmonella enterica subsp. enterica serovar Typhimurium
1_pfamImport  74 SSAQSAAAKAVLDRTLP-HGYIIAQ 97 
9_pfamImport  75 SEHDQANAKAAMLPTLG---AETQI 96 
Q9KLQ0        91 NETQQSQARNALDALVKegdtitys 115 Vibrio cholerae
Q6LK07        92 NDNQQTQAKKVLSNVVKdKStltla 116 Photobacterium profundum
Q5E6H6        85 DEAQQVAAKDVLGSVI--DEsqkgt 107 Aliivibrio fischeri ES114
A4THL5        85 FPEQQMQAIEVLQDVLP-AGYAIva 108 Yersinia pestis Pestoides F
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