5Y62


Conserved Protein Domain Family
DUF4154

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pfam13689: DUF4154 (This model is not part of the current CDD release)
YfiR/HmsC-like
This family of proteins is found in bacteria and includes YfiR from E. coli. YfiR has been shown to regulate YfiN, a diguanylate cyclase and a bifunctional protein that produces c-di-GMP in response to reductive stress and then dynamically relocates to the division site to arrest cell division in response to envelope stress in Escherichia coli. YfiR may serve as a periplasmic redox sensor that regulates YfiN activity in response to reducing conditions. HmsC in Yersinia Pestis is the orthologue of YfiR from E. coli. HmsC is a periplasmic protein that interacts directly with the periplasmic domain (PD) of HmsD and causes proteolytic degradation of HmsD, which in turn negatively regulates Y. pestis biofilm formation.
Statistics
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PSSM-Id: 520863
Aligned: 102 rows
Threshold Bit Score: 50.332
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5Y62_A           17 VSQVLLGIFSY-VRWPKE--PavLQLCVVGPt----------EYADGLLRgM--VQANG--RRVHAERraVDNPDLG--T 77  Pseudomonas ...
1_pfamImport      4 AARMVLGIISY-SRWPVAppV--IRLCVISPt----------DYAEMLFNpAlmETT----HPVQTQR--YSLPNNSlnS 64 
CBJ90891         16 VARVVSGIISY-THWPATraV--LRLCLVPPs----------NYISVLTHiNmiSDQ----TELQIET--LNFNAEQliE 76 
Q6FED4           19 fyALTLSIMSY-SKWPADn---vPTLCIIDNp----------TVANSFQSqVkqQSYSYkiQAIPASS--FSKTQ----- 77  Acinetobacte...
Q8ZMW5           32 VRAIVSGIVSY-THWPALsgP--PRLCIFSSa----------RFVRVLSEeAdwA------FPYQPLV--IRTTQEAlsA 90  Salmonella e...
P64548           32 VRMMVSGIVSY-TRWPALsgP--PKLCIFSSs----------RFSTALQEnAatS------LPYLPVI--IHTQQEAmiS 90  Escherichia ...
wugsc:CKO_03923  41 VRSIVSGIVSY-TRWPALsgP--PRLCIFASs----------RFADVLNDnSarS------LPYLPVI--IRTEQEAlaA 99 
WP_002445493     46 vnSIVNGIISY-TRWPQLngL--PRLCIFSSa----------TSASQLAReQn-------rPVFTPVI--VANTDQAlrE 103 Shimwellia b...
IEC:ABF-0016028  64 vRRTVSGIISY-SHWPRLtgL--PTLCVFSSa----------HFVSGLTTpVdsQEK----RLFNTVT--VKDTQEMfaS 124
WP_012234033     35 QAEIVTRILPYdRGFPERvkGq-VSFLLLSRagdadsasaalQMRRALNDiGk---VRD--KPIRVES--AEYSSASelA 106 Sorangium ce...
5Y62_A           78 L------CNVIYLGVVdereRQQVFRSLAGHPVLSISERgTECSVGSMFCLNVGGPRITFEANLDSIARSGVRVHPSVLK 151 Pseudomonas ...
1_pfamImport     65 K------CDVVYLGHIelqqRQQLSIQLNGTPILTISEDyNECTFGSVFCLLLNDKQVSFKVNMDALARGGVRIHPSVLQ 138
CBJ90891         77 K------CDVIYYGQIdpllQQQVINQNNNKPLLTIAENnPHCEIGSAFCLNIDSTQATFSLNLDILTRSGVRVHPNVLQ 150
Q6FED4           78 -------CQAVYFSNLspqqQQNLINSYPTRNVLSFSSNnSDCEIGSIFCLYQQKGNATFKVNLDSLSRSQIRIDPRVLL 150 Acinetobacte...
Q8ZMW5           91 R------CDGFYFGNEspayQVELTRHYPVNALLLIAEQnTECIIGSAFCLIINNDEVKFSVNLDSLSHSGVRVNPEVLM 164 Salmonella e...
P64548           91 G------CNGFYFGNEsptfQMELTEQYPSKALLLIAEQnTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNPDVLM 164 Escherichia ...
wugsc:CKO_03923 100 R------CDGFYFGSEspayQVELTNKYPSKALLLIAEQnTECIIGSAFCLIINNDEVRFSVNLDSLSRSGVRVNPDVLM 173
WP_002445493    104 N------CDAVYFGHEsvqqQIALREQYHGKPQLYIAEQnPDCSAGSVFCLNITDKKISFSVNLDSLSRSGVRVSPDVLM 177 Shimwellia b...
IEC:ABF-0016028 125 D------CDAVYFGEEtiseQVDIASYAVGHPLMTIAEQsPDCHEGSAFCLVFAGKTVGFSINMEALSRTGVRVNPDVLM 198
WP_012234033    107 AtcrardINVVYISSGlgreVASIRGALTDTGILSFAAVePYVSQGAVLGVDVADGKPRMSINLAQARAQHIDFPAPILK 186 Sorangium ce...
5Y62_A          152 LA 153 Pseudomonas aeruginosa PAO1
1_pfamImport    139 LA 140
CBJ90891        151 LA 152
Q6FED4          151 LA 152 Acinetobacter baylyi
Q8ZMW5          165 LA 166 Salmonella enterica subsp. enterica serovar Typhimurium
P64548          165 LA 166 Escherichia coli K-12
wugsc:CKO_03923 174 LA 175
WP_002445493    178 LA 179 Shimwellia blattae
IEC:ABF-0016028 199 LA 200
WP_012234033    187 LA 188 Sorangium cellulosum
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