Conserved Protein Domain Family
Toprim_4

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pfam13662: Toprim_4 
Toprim domain
The toprim domain is found in a wide variety of enzymes involved in nucleic acid manipulation.
Statistics
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PSSM-Id: 493588
Aligned: 74 rows
Threshold Bit Score: 38.3898
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012955513 174 DAIIVVEGRNDVLNLLKYGIKNTVAVEGVNIPTSVAELTKKRTvTAfvdgdrggelILKELLQVGEVDYitrapRGKEVE 253 Methanobrevibac...
WP_012175569 259 GTVYITEGYMDFLSLYRHGIKNVVATLGTALTAEHLR--MLKGfV-------------TKAVLVFDSDA-----AGIKAA 318 Desulfosudis ol...
WP_015904788 263 DCVYIVEGYFDFLSLFQNGIKNTVASLGTALTVDHVRRLKGFA---------------TRAVLVFDSDN-----AGINAA 322 Desulforapulum ...
Q7UQG2       309 DEVLVMEGYTDVVATRMAGIDHSVAVLGTALTASHVR--VLKR-F------------VNRVVLVLDGDD-----AGKRRA 368 Pirellula sp.
Q2LVF2       262 GYVILVEGYFDLIVLWNAGIKNVVATLGTALTKDHVALIRRYT---------------DQVAITFDSDE-----AGKKAL 321 Syntrophus acid...
Q4FPR0       257 DHVYLVEGYMDVVGLSKNGIENVVANLGTSLTDRQILMLNQFF---------------EDIIICFDGDE-----SGYKAA 316 Candidatus Pela...
vmpbio:AM488 253 GRIIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLR--HMWD--I----------V-PEVVVWMDGDG-----AGMNAS 312
WP_012111236 261 GTVIAVEGYMDVIGLSQGGIDNAVAPLGTALTEDQIALLWRMA---------------PEPILCFDGDK-----AGLRAA 320 Parvibaculum la...
Q2G652       256 GRVVVVEGYMDVVALAAAGIGEAVAPLGTALTEHQIE--RLWR--L----------V-ETPTLCFDGDA-----AGQRAA 315 Novosphingobium...
WP_013418005 257 RAVILAEGYMDVIALARGGFPNAVAPLGTALTADQLR--LLWA--M----------S-PLPTLCFDGDS-----AGRKAA 316 Rhodomicrobium ...
WP_012955513 254 DLEKEevlvalrdKA-PTEQVINNLD 278 Methanobrevibacter ruminantium
WP_012175569 319 QRSIEif-----nG----EKGIQPFI 335 Desulfosudis oleivorans
WP_015904788 323 KRCVS--------TFaAEGVDVRILV 340 Desulforapulum autotrophicum
Q7UQG2       369 EEVLElf----vtA----DADLRILT 386 Pirellula sp.
Q2LVF2       322 ARSVE--------MFiAAHMDARAVV 339 Syntrophus aciditrophicus SB
Q4FPR0       317 LRAAEns-----iKElQPEKQISFLF 337 Candidatus Pelagibacter ubique HTCC1062
vmpbio:AM488 313 MKIAHla----lsII-KSGHSIRFVT 333
WP_012111236 321 YRAVErv-----lPLlKPGHSLRFAL 341 Parvibaculum lavamentivorans
Q2G652       316 MRAITra----lpLL-RPGHSLRIVT 336 Novosphingobium aromaticivorans DSM 12444
WP_013418005 317 HRALDta----lpFL-EPGRSLQFAF 337 Rhodomicrobium vannielii
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