Conserved Protein Domain Family
PIN_4

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pfam13638: PIN_4 (This model is not part of the current CDD release)
PIN domain
Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).
Statistics
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PSSM-Id: 520836
Aligned: 79 rows
Threshold Bit Score: 70.3424
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_011388952  107 WVLDTNTLMSCLELLKALfaslltrnvafaaatkqqyasssalpttpSSIK-LVLPYIVVSELDGLKVTSRkdd----sg 181 
XP_002549221   86 LVLDTNIILHAIDLLENTq----------------------------CFYD-VIIPQTVLEEV---KNRSFpi------y 127 
Q757P3         96 VVVDTNIVLQAIDLLENQk----------------------------CFTD-VVVPQVVLEEVRNQSYPVYm-------- 138  Eremothecium ...
XP_001967470   64 IVVDTNVVLDQIDVLEe-----------------------------dVLRN-VIVLTTVLNEV-KHKSSSiykrfnelvh 112 
Q5KJ33         87 LVIDTNIVLHQMDLLQSLp----------------------------AQLP-LIIPSTTIRET-RHRSLPLynr----lq 132  Cryptococcus ...
XP_002175127   84 LVPDTNVFIHCMDLLENp----------------------------nNFFD-VIVLQTVLSELSGRSIPLYnrv-----k 129 
XP_002508914   58 IVIDTNVALHQLDLLAh-----------------------------kSIAD-VVVLSVVLEECRNRSKSSYd-------- 99  
Q9SHL7         52 IVVDTNVVLHQIDLLEN------------------------------KAIDtVVVLSVVLDE---VKNRNRsv------y 92   thale cress
Q6C0V6        770 IIFDTNLWLNELEFIVTVve--------------------------sGWLR-IKVPVMVMHELQKLQTFNRd-------- 814  Yarrowia lipo...
EEQ39853     1073 ITLDTNIWLKHCGRIFkcv--------------------------rnHIFK-VSVPLIVFQELRSLRKSTEa-------- 1117
XP_011388952  182 rPVASKAR-EANHWLLSA-LQK---Q-KRVSINEL-SANLSQDlwplfvqpsthynhskrsRRhgshsdlLE--PDDEII 252 
XP_002549221  128 qRLRNLVKsEDKRFIVFH-NEYn--E-ETYITRNK-NESIN---------------------D--------R--NDRAIR 171 
Q757P3        139 -RLRTLCR-DSDETKRFA-VFHnefCeSTYVARAA-DESVN---------------------D--------R--NDRAIR 183  Eremothecium ...
XP_001967470  113 dRTRHFYV-FVNEHHKDT-YADr--E-PDETANDR-NDRAIRi-------------------A--------TkwYDDHIR 159 
Q5KJ33        133 qLIQDEDR-LIWVWWNEE-RREt--A-TVREVDEE-HGREKIn-------------------D--------R--NDRAIR 177  Cryptococcus ...
XP_002175127  130 rVCQEKTK-RFVTFSNEF-FS----D---TYITKV-DEEEVN--------------------D--------R--NDRAIR 169 
XP_002508914  100 rLRSMCQD-PTKRFF--V-FANe--H-HRDTYIKA-EPGESPn-------------------D--------R--NDRAIR 142 
Q9SHL7         93 nRIRLLCS-NPARQFYVF-SNHv--H-KDTYVQAM-EKESAN--------------------D--------H--NDRAIR 136  thale cress
Q6C0V6        815 vRTSTLAQ-QALAYIKSK-GQGs--S-LTIVGLDG-AA-LNEQacaegvv----rftndygGLpkr--gqPT--MDELIT 879  Yarrowia lipo...
EEQ39853     1118 -TIADAAT-RSVIIIRELyLARe--I-VPLRFDGSvASDINETtef------------ennSNw-----mSN--VDSTIL 1173
XP_011388952  253 QFCVELKKQT--------------------------ASHV--RFCSDDINARTKAETDGVDSLGM 289 
XP_002549221  172 KVAQWFNNHLp-------------------------TIKT--FLICNDKDNRTKAINEGIEAKSL 209 
Q757P3        184 RTVEWYSEHLr-------------------------ERGIvaVLVTNDRENLARAVGAGLEAQSL 223  Eremothecium gossypii
XP_001967470  160 ASQSSKDLert----------------------gktATRV--ILLTDDAGNRAKAEADGILVASA 200 
Q5KJ33        178 QTVLFYAEHLsrl--------------------asnAPSL--ILLTDDAANRGLAAEQGIVAVSA 220  Cryptococcus neoformans
XP_002175127  170 KATHWYANHLag-----------------------vGINV--VLLTDDAENGRKAREEGLQVSST 209 
XP_002508914  143 VAAKFYQRAIp-------------------------SKRI--VLLTNDRGNLLRAKEEGVDALSV 180 
Q9SHL7        137 VATLWYQKHLg------------------------dTSQV--LLVTNDRENKRKATEEGISAETI 175  thale cress
Q6C0V6        880 RTVCKLQKGSrg-----------------------gVVRA--LLVTNDKNMRILALTQSVAVSSG 919  Yarrowia lipolytica
EEQ39853     1174 NVVNEHDEACkrmlkglnatinqknayvldkkaarmFRYC--ILVTDDRNMRLRAKTSGL--VSY 1234
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