Conserved Protein Domain Family
DDE_Tnp_1_3

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pfam13612: DDE_Tnp_1_3 (This model is not part of the current CDD release)
Transposase DDE domain
Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.
Statistics
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PSSM-Id: 493544
Aligned: 12 rows
Threshold Bit Score: 260.344
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CDD18495      19 GRCTDITFVDSTMIPICHNLRRYANKVFKGIATDGKGTMGWCHGFKLHLAYNDRGEIIAFVLTGANVSDKDPEvfKvLAK 98 
WP_011803448 106 GTCTGISIADSTPLAVCHNLRINRHRVFQGIAQRGKSSTGWFYGFKLHAVINHQGELLAIKVTPGNIDDRKGLl-T-IAS 183 Polaromonas nap...
Q81ZS5       105 GQCDGISIADATAIAVCDNRRIARHRVFADSARRGKTSMGWFYGFKLHAIINSRGELIRLRLTAGNVDDRKPM--PdLCQ 182 Nitrosomonas eu...
WP_013183081 105 AQTQGIAFIDSTKIAVCHNLRIPRHRVFEGMAQRGKTSTGWFYGFKLHLVINDCGELLAVKLTAGNQDDRQPV--RaLTK 182 Xenorhabdus nem...
Q7M788       105 GKPTKIAFIDSTSLCVCHNIRIPRHKVFKGIAQRGKTSMGWFYGFKLHLVVNHQGEILALKVTPGNVNDREPV--ReLSK 182 Photorhabdus la...
Q12LE0       105 SLPTGIEFVDSTSVKVCHNLRIPRHKTLSGLARRGKGTMGWFYGFKLHLIVNHKGGIVAAKITPANTHDTKPV--SgMVV 182 Shewanella deni...
WP_011768502 105 GKPTGIAFIDSTKIAVCHIIRAKRNKVFNGTAKHGKGTMGWFFGFKLHLIVNHLGDILSVKITEGNVDDRNPV--PdMVG 182 Psychromonas in...
WP_011944636 104 GDETGIYYIDSTKLAICHNKRTSSNRVFNRFSKIGKSSYGWFLGFKLHLIINNKGEIMSVKITKGNKSDLSMA--SvISK 181 Orientia tsutsu...
Q6MD88       103 GKVTGIAFIDSTSIAVCHNKRISRNKVFAGLAKRGKNTSGWFYGFKLHIINNDSGEILAFQLTPGNVSDVSMA--EtLSK 180 Candidatus Prot...
Q6MB33       103 GEITGIAFIDSTSIDVCHNKRIKRNKVFKGLAKRGKTTSGWFFGFKLHLMINEKGEILAFQLTPGNVADVSIA--EtLSK 180 Candidatus Prot...
Q7NPA6       105 GRCTGISFIDSTPLHVCHVRRVHAHKVFAALAAWGKSSVGWFYGFKLHLVVSERGELLAMSVTPGNTDDRKPVp-E-LLK 182 Gloeobacter vio...
Q7MV38       108 GQCTGISFIDSTPLKVCHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLkdGtFTK 187 Porphyromonas g...
CDD18495      99 RLYGKLFADKGYISQRLFDILfED-GIQLVTGLRVNMKNKLMPFYDRMMLRKRYIIETINDMLKNTAQIVHSRHRSV 174
WP_011803448 184 SLFGKLYADKGYIGKDFASKM-KDkGIEVVTRVRKNMKEVVHSGFDQALLRKRSLVETVFDELKNLCQIEHTRHRSL 259 Polaromonas naphth...
Q81ZS5       183 GLFGQLFADKGYLAQWLTEALdQQ-NLQLITPLRKNMRPVPRTRFEKVILRRRSLIETVFDELKNLCQIEHTRHRSL 258 Nitrosomonas europaea
WP_013183081 183 GLTGCLYGDKGYLSQALCDELeAE-GVTLITNVRNNMKTKALSLWDRLMLRRRFLIETVVDQLKNISQIEHSRHRSQ 258 Xenorhabdus nemato...
Q7M788       183 SLTGYLYGDKGYLSQELADDLaKI-GVTFITKKRRNMKAQALSEWNNLMLKKRFIIETINGQLKTISQIEHSRHRSI 258 Photorhabdus laumo...
Q12LE0       183 NAMDKLYADKGYISKALASELlEQ-GVTLVNNVRKNMKKKVLSLWDRAMLSRRFIIETINDQLKNISQIEHSRHRSV 258 Shewanella denitri...
WP_011768502 183 ALSGKLYGDKGYLGKALASKLqEK-GVELITNVRKNMKKGVISKWDKAMLSKRYLIETINDQVKNISYVEHTRHRSI 258 Psychromonas ingra...
WP_011944636 182 GLSGKLFGDKAYISKKLFHQLlSN-ALRLFTNLRKDMKTYLLHIEDKRLLNKRSLIEPVFNVLKKHMLLEHTRHCSP 257 Orientia tsutsugam...
Q6MD88       181 GLFGKLFGDKGYISGKLTESLlEQ-GLELFTSVRANMKQKLMTFNDKILLRKRSLIETVNDQLKNISQIEHTRHRNI 256 Candidatus Protoch...
Q6MB33       181 GIFGKLFGDKGYISKELSKRLlKQ-GLELFTTLRSNMKQNLMKLTDKILLRKRAIIETVNDQLKNISQIEHTRHRNA 256 Candidatus Protoch...
Q7NPA6       183 DLHGKVFGDRGYISGKLGRQLrEDfGIALMTKLRRKMTNRLMVMTDKLLLRKRGIIEAINDQLKNISQIEHTRHRSE 259 Gloeobacter violaceus
Q7MV38       188 NLFGKLIADRGYISQNLFDRLfVD-DIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDILKNLCRIEHTRHRSV 263 Porphyromonas ging...
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