Conserved Protein Domain Family
HSDR_N_2

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pfam13588: HSDR_N_2 
Type I restriction enzyme R protein N terminus (HSDR_N)
This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.
Statistics
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PSSM-Id: 493524
Aligned: 25 rows
Threshold Bit Score: 92.671
Created: 16-Feb-2025
Updated: 25-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012809307   26 PEEKVRQRYVCTLVNDFGYQLEQMAQELKVTnSKr--gQGKARADIVI---WKSTdekdesKS---AFIVVECKAENVKI 97   Lancefieldell...
WP_015905021   18 GPEESRQTFERFLVKEKGYDKHDIRVDEPIC-VTfqgeAYHSTIDLVV---FCKD-------R---PVMAVRCIAGSLGS 83   Desulforapulu...
WP_012214993    8 TESEIRKKYISKLSIEYGFDEKNIRLDVPVQ-LG----LKRFIADAII---YQDD-------R---PFVLVEIKTDLTLN 69   Nitrosopumilu...
WP_014003882   44 PEEIVRQKFIRTLVEHYGYALEQMDQERRTQ-HG----HKSPRADIVV---WQTAmekeagRT---PVLVVECKTDTIEI 112  Acidithiobaci...
WP_012102160  528 NEEKVRQWFLRELQQTYKYPEDLLKVEYKIN-SF----SKIGFADVCVq-iYSND------TQv--PYILAEVKTSGMPL 593  Clostridium k...
WP_012447274  526 HEEVVRQWVIEELINTLNYPLELIDIEYEIQ-LF----SATGYVDIVV---FKNM------KGkivPYIFIEAKHYNTSL 591  Natranaerobiu...
WP_013487759  525 KEEVVRQWLLKELVNTYGYPLELIKLEFPVQ-QF----SKRGYVDIGVsifVNGE------MV---PYIFAEIKRFGAGI 590  Evansella cel...
WP_012799153   26 PEEYVRQTIEKRLVNEHEYKRGQVRVEFTLH-VG----SNKPRVDLAI---FENEsvpqtqEN---VRIAIECKKESVSP 94   Slackia helio...
WP_011940409   57 PEEAVRQLYVMVLKDDLDYPINRLSLEYDVT-RG----REKKRVDICV---FDKD------KTt-tPYILVELKKPKLKD 121  Geotalea uran...
ACH40244       59 PEEIVRQLWLYRLIHNYNYPVSRVTVEYPIT-FGr---DTSKRADIVV---FDKDr------Pt-vPYLIVEVKKTKLKE 124 
WP_012809307   98 --HVEDYYQGFNYAS-W-A-HAQFFVTTNEKETKYFNVDPtyLPQ---K--LEEVVGIP 146  Lancefieldella parvula
WP_015905021   84 --YEREILAGARLVY-E-F-QIPFSVATNGLDALMRDVVT--GKQ---R--GKGLDALP 130  Desulforapulum autotrophicum
WP_012214993   70 --FEQAKNTLEQMSS-V-L-GNNFVILTNGYYDICYEIEK--SSK---QikFNEIPDIP 118  Nitrosopumilus maritimus
WP_014003882  113 --QERDYYQGESYTR-A-T-GCEFFIATNARHTAVFKLVPg-LPG---G--FVAINEIP 160  Acidithiobacillus caldus
WP_012102160  594 --SD-ALSQLKSYMS-N-CsSCQYGLVTNGFQCIVIN-------K---D--FEEISDVP 635  Clostridium kluyveri
WP_012447274  592 --DKQDVNQLKSYLEgN-S-SVEYGMLTNGKDFKILKKQS--KKG---E--FEYIDSLP 639  Natranaerobius thermophilus
WP_013487759  591 --ES-GFAQLTSYIE-AdA-SVRYGVVTDGLEIKCVDR----------Q--GEVLNDIP 632  Evansella cellulosilytica
WP_012799153   95 saKKDGVGQLKSYMS-C-CpNCEWGLWTNSLQKFVFRKSV--DDEghiT--FMEYNDIP 147  Slackia heliotrinireducens
WP_011940409  122 -----GKEQLKSYCN-F-S-GAPMGVWSNGDSISFYH-RK--DPN---Y--FEPIPAIP 164  Geotalea uraniireducens
ACH40244      125 --GK---EQLKSYCH-A-T-GAPLALWSDGSLVTFWH-RK--NPN---Y--FVEIPEIP 167 
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