Conserved Protein Domain Family
2_5_RNA_ligase2

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pfam13563: 2_5_RNA_ligase2 (This model is not part of the current CDD release)
2'-5' RNA ligase superfamily
This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.
Statistics
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PSSM-Id: 520800
Aligned: 79 rows
Threshold Bit Score: 51.6439
Created: 16-Feb-2025
Updated: 25-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002292087  166 PPPSASKA--WEQLTea--rKECRDPG---FFRWP-PHANLLYPFIESNFStfdgavdkldleesenairaqfiDAVVEH 237
WP_008197575   13 PEGKLQDQ--VTELKll-lkEEFNIKY---ALKSP-AHITVKMPFSYNEQKe----------------------NVLIGR 63  Algoriphagus m...
XP_024390841   36 LDPKSQHF--FDTLR-----EEHFPKE---RSFLK-AHLTLFHHLPSHNY------------------------DNIRSQ 80 
Q2G8N7         52 LPPPIQRW--ASALR-----AAHFPPE---RNFLQ-AHVTLFHALPVVLL------------------------EEARAL 96  Novosphingobiu...
jgi:Pden_1521   9 PQFEPSVAerIRRFR-----TENEPAR---AELVP-PHVTLVFGLMNIRP------------------------QEFQEH 55 
WP_010075174    8 IFPKFENGqvIDKIR------EKYDPL---VTHVR-PHITLVFPFDSNIKT-----------------------NELKNH 54  Clostridium ce...
WP_012412512    6 VYYPNINTqqINKIR------QKYDPQ---FYLIE-PHITLIFPLLGFIGE-----------------------DRLTIH 52  Nostoc punctif...
Q897S8         10 FKDNVLKF--HEKLVnd--vCYKFNVK---RQKLP-AHFTIKAPFETDNI------------------------KEIEKI 57  Clostridium te...
WP_022071446    9 vkgpagNF--NNNLR-----KEVFEKLgakSSKLP-AHFTIKAPFEADDI------------------------SDLDKV 56  Intestinibacte...
Q0W5D8          3 IQVRIGPE--KEKIKeiiqkAHKGSGL---YSKHTvPHMTLYGDFKAPASSf----------------------PRIKSV 55  uncultured met...
XP_002292087  238 LSTAAEQCKPFEVTL--DSFGTFGGks-rgVLWAYPrskysmfdggeeegsdDDEEPLMRLQNLLEQQ---FPMC---KD 308
WP_008197575   64 LKDFVQNYDTMEMVI--GGVKTFgd----rVVYLNV----------------EAGKDLYHFQSELKTF---CKRE---LK 115 Algoriphagus m...
XP_024390841   81 IEETATAEAPLPIAV--TGVRNLGrg---vAFTLES-------------------QRLRALHKRLQRQ---WHPE---LT 130
Q2G8N7         97 LSGLAAGHAPVEARL--VGIMDLGgg---tALRLES-------------------PGMLALRERIADH---FHGM---LT 146 Novosphingobiu...
jgi:Pden_1521  56 CEAVASRSSQFEVSFasEEITHDPFekthkLLLVSS----------------TGSSHLAALHDQLYEG---VQRA---ER 113
WP_010075174   55 ISLVLSEVETFEVIL--KGITPVSSfg--kYLFLNIe---------------KGTEEIIQLHKKLYTG---ILEE---HF 109 Clostridium ce...
WP_012412512   53 IKNILSAWKIFPIHL--QGFQKSwd----eYLFLTVq---------------EGKENAIKLHNDLYTG---ILAE---YC 105 Nostoc punctif...
Q897S8         58 TEEFVKNNNKQNIQI--NGFDKFrt----dVVFMKV----------------IPSKEALKVHDEFINV---LKQVswlRW 112 Clostridium te...
WP_022071446   57 LQDFAQNHNAEDYKI--KGYNHFdn----rVIYMDV----------------HMSKECKILHDELIEElekLPYI---HF 111 Intestinibacte...
Q0W5D8         56 IMETAKCYETLPFHI--DGYDFFQGkh-gyVCALKV----------------IPSTPLVDFRRDLSSKm--IKVA---PS 111 uncultured met...
XP_002292087  309 Qkk---qGTFTPHITISHYANNTDA-LTAKEGIe----------------------sKWQPVSFPVSEVYLLQRKGDD 360
WP_008197575  116 LvdelsdRNYHPHMTVAFKDLKKHPiPNIIKVLe----------------------sKTISEKFVVNHLFLLIRQNGR 171 Algoriphagus mac...
XP_024390841  131 Pqd---qQRLYPHITVQNKVDAAAA-AALHRELa----------------------aQFQPFEATGTALQLWAYRGGP 182
Q2G8N7        147 Aqd---sHAPRLHVTVQNKVARADA-IALQQRLs----------------------gEIARQSFAFTGLALHHYAGGP 198 Novosphingobium ...
jgi:Pden_1521 114 Kd----dIPYRPHMTVATNPDRTII-ERLETSSl-----------------------GDFPLLGTIRALEVVKLEHGG 163
WP_010075174  110 Pewl-kgNNFLPHMTVGSFQKEEEF-QMAAEETk----------------------aVVDAFRTIVTAVSVEIIDENE 163 Clostridium cell...
WP_012412512  106 Re----nTAFVPHLTLGVFSKNRVQyLQALEEAq----------------------qLDLDYCCMVEKLNLLKITDVN 157 Nostoc punctiforme
Q897S8        113 KhhegnnKNKVFHCTIVSRIKEDKF-YDICEYVn----------------------kYNPQFETYFDNICILKWGNNR 167 Clostridium tetani
WP_022071446  112 Knh--dyKDKVFHVTISSKKIQKIY-HELWEYVn----------------------nIPCDFDCKFDNVSVFKWEDNt 164 Intestinibacter ...
Q0W5D8        112 LrdwdsdDDFKFHITIAHRL-RYSQyKNVRQYLetgkqsfiqkllsfltgskpqirqFRPYLPMDGVRITMLNDNRRI 188 uncultured metha...
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