Conserved Protein Domain Family
HTH_31

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pfam13560: HTH_31 (This model is not part of the current CDD release)
Helix-turn-helix domain
This domain is a helix-turn-helix domain that probably binds to DNA.
Statistics
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PSSM-Id: 520798
Aligned: 83 rows
Threshold Bit Score: 29.4093
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ABS04274      16 ALGMFLRALRNRCqpqevglsgragpaglsgsgayrrvpglRRQEVADLAGV-SLDYYTRIEQGRCgEVsGAVLTSLARA 94 
WP_013020610  13 QLGRFLKEYRLRAg--------------------------lKPGD-AEVVKIaKASKLKAIEAGRVqSFrYADILAFGSI 65  Stackebrandtia ...
WP_011874860  13 LIGNELRHYRLQAg--------------------------rTVAESGKVLGC-SHAKITHLETGRYq-QqPAEVAELLEF 64  Saccharopolyspora
WP_009949154  13 LVGIELRHFRSRAr--------------------------iSAAAAGKEIRT-NQSKIAHMESGRY-RQkPDEVAVLLKL 64  Saccharopolyspora
WP_012013677  12 QLGRYLKQAREEAg--------------------------iPLEAAAKRLEW-SRARMYRIEGAQTs-VrTHDVELMCRI 63  Salinispora tro...
Q2JG07        16 QLGRYLRDLRNQAr--------------------------lTVRAAARRLEW-SEAKIWRIESGLTs-LrSFDVEIMCRI 67  Frankia casuarinae
WP_011905248  12 QLGRYLRELRENAy--------------------------vTVSAAAKELEW-SAPRIWRYETGQVp-MhPNDVEAMCRV 63  Salinispora tro...
Q9F3F8        13 RLGTELRRLREAAg--------------------------lKAREAAGLISS-TSAQMSQVEAGFAg-AsEARVRRLAAH 64  Streptomyces co...
WP_015800672  14 QLGLALASMREDAg--------------------------fTAERVAKVLEC-SVAKIRRIEAGDVs-VrAAELNALMDH 65  Actinosynnema m...
WP_015800961  10 QIAATLRRMREQAg--------------------------vGRDQAAVLLGC-TISKIGDLETGRS-RPkPVELERLLDH 61  Actinosynnema m...
ABS04274      95 LRA-TVEETAHL 105
WP_013020610  66 YDV-TRDELDNL 76  Stackebrandtia nassauensis
WP_011874860  65 YEV-SRHDVDRL 75  Saccharopolyspora
WP_009949154  65 YGA-PQSEVDRV 75  Saccharopolyspora
WP_012013677  64 YGT-SDEMRSAL 74  Salinispora tropica
Q2JG07        68 YGA-PTDLTEAL 78  Frankia casuarinae
WP_011905248  64 YGT-TQETIetm 74  Salinispora tropica
Q9F3F8        65 YACaDEALVDAL 76  Streptomyces coelicolor
WP_015800672  66 YGA-TKQARKHI 76  Actinosynnema mirum
WP_015800961  62 YGV-MGDERGEL 72  Actinosynnema mirum
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