6TEH


Conserved Protein Domain Family
GTA_TIM

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pfam13547: GTA_TIM (This model is not part of the current CDD release)
GTA TIM-barrel-like domain
This domain is found in the gene transfer agent protein. An unusual system of genetic exchange exists in the purple nonsulfur bacterium Rhodobacter capsulatus. DNA transmission is mediated by a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacement occurs. The genes involved in this process appear to be found widely in bacteria. According to the SUPERFAMILY database this domain has a TIM barrel fold.
Statistics
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PSSM-Id: 520791
Aligned: 29 rows
Threshold Bit Score: 400.508
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6TEH_D        446 SMRRFILHYAHLCQLAGGVDAFCIGTEMVALTQIRGPSNSFPAVAAFRQLAGEVKAILgPGCKIGYAADWSEYWGYAP-- 523  Rhodobacter c...
WP_012563725  423 NYRRMILHYASLAAASGGVDAFLIGSEMKALTRVRSGEGVYPAVTALVTLAADVKAILgAATTVTYAADWTEYGADVVsp 502  Afipia carbox...
2_pfamImport    2 SLRRMVLHYAHLAVMAGGVETLLIGSEMAALTRVRGPGGSFPAAERFARLAADVKGIVgAGTNVSYGANWDEYGGQAF-- 79  
1_pfamImport    2 SLRRMVLHYAHLAVAAGGVEAILIGSEMVALTRLTDDTGAFPAAEALAALAADVKAVVgAETRVSYAADWTEYGAQVR-- 79  
WP_013300655  416 RYDSMILHYAHLCVAAGGVDVFLLGSELRGLTRLRDDTGAHPAVDRLRQLAAAVRQILgPDVQLSYAADWTEYGAYHPdd 495  Parvularcula ...
WP_013268687  379 GLRRLALHYAGLAAETG-CDGLLIGSEMRGLTWTRDAAGGYPAVAQYRTLAAECRAVAgPDVALSYAADWSEYSGHRPdd 457  Brevundimonas...
WP_015827109  429 RYRRFILHYADLVRRAGGVHAFLIGSEMIGLSRIRSARGVYPMAGHMVQLAAEVRAIVgGLCKLSYAADWTEYGAYVPpd 508  Hirschia baltica
Q0AR61        408 RYRRFILHCAALAKAAGGVDGFLIGSEMVALTTSGAGEN-YPAVAALCALATEARSLLgPSTRLSYAADWSEYHGHQS-- 484  Maricaulis ma...
WP_013653655  419 SYRRFVLHNAHLAQAAGGVDAFLIGSELRGLTRGHAGGGSYPFVDALRALAADVRAVTgAATKLSYAADWSEYGGHQV-- 496  Polymorphum g...
WP_012562011  418 GYLRFIRHCMALAEQAGGVDSFVIGSELVALNRIRGGAGGYPAVPFWRQIASEAKIRLgPRCIVTYAADWSEYRYHDR-- 495  Afipia carbox...
6TEH_D        524 GNGERFfHLDPLWADENIDFIGIDNYLPLSDWRDGADHADA--GWGSIHALDYLRSNIEGGEYYDWFYAAPEHRA----- 596  Rhodobacter c...
WP_012563725  503 NASEVRfPLDPLWASSAIDAVGIDYYAPLSDWRDEAGHLDAa-eTPSIYQRDYLRGRLTSGEAYDWFYADAAARA----- 576  Afipia carbox...
2_pfamImport   80 ADGTLAfPLDILWGSPAVDFVGIDYYAPLADWRDGADHLDAa-rAVTLYDRAYLKANLRGGESYDWFYADEAARA----- 153 
1_pfamImport   80 TNGDVRfPLDQVWSAPAVDFIGIDFYPPLSDWRDGAGHLDAt-lAADIHDRAYLKANLSAGEGFDWFYADDAARA----- 153 
WP_013300655  496 GSGDVLfPLDSFWADEAVDLVAIDNYMPLTDWRDGRQHADAa-lFDGPTDPDYLAAGIAGGEGYDWYYADAAARG----- 569  Parvularcula ...
WP_013268687  458 GSGDVVfHLDPLWADAAIDCVGIDWYPPLGDWRDGDGGVDAe-aFAGPDDPAYLAAQVAGGDGFDWFYAGEADRA----- 531  Brevundimonas...
WP_015827109  509 GLNDTDfPLDALWASEDIDFIGVDWYPPMADWRPTSGHADNeaGWKSIHDPAYLAVNIEGGEAYDWYYANDEDRA----- 583  Hirschia baltica
Q0AR61        485 GGGAKIfHLDPLWSHPAIDAVAIDFYIPLADWRDGDDHLDAa-qALGPHDKSYLASQVTGGEGHDWYYASPEDRD----- 558  Maricaulis ma...
WP_013653655  497 AAGALRfPLDPLWADPAIDFVGIDNYLPMTDLRDGGDP-DGn---dDPYDLALLRAGIAGGEYHDWFYASAADRG----- 567  Polymorphum g...
WP_012562011  496 GGANVDfPLDALWADPNIDVVGIDAYFPLTD------------RPRAVYDKAAIAAGWASGELIDYYYATQDDRDlgrrg 563  Afipia carbox...
6TEH_D        597 -AQIRTPItdgdHDEPWIWRAKDLRNWWLNDHHERVGGLRSEVATAWVPQSKPIWFTEMGCAAIDKGTNQPNKFLDPKSS 675  Rhodobacter c...
WP_012563725  577 -AQVRSPItd-glGKPWIFRAKDIWSWWGSAHHERVDGNELPAATTWTPASKPIWLTEIGCPAVDKGANQPSVFPDAKSS 654  Afipia carbox...
2_pfamImport  154 -AQVRTPItdgaYGEPWVFRQKDLWSWWANAHHARPGGVRDGAPTAWVPGAKPIRLMEMGCGAVDKGPNRPSTFPDAKSS 232 
1_pfamImport  154 -AQVRTPItdgaYGEPWLYRQKDLKSWWANAHHERIAGTRLATPTAFAPGAKPIRLMETGCPAVDKGANRPSVFPDAKSS 232 
WP_013300655  570 -AQDRTPIldtaHGEDWIFRVKDLRSWWSEPHHARPGGARAATPTPWQPQSKPIWFAELGCGAVDRGSNQPNVFFDPKSV 648  Parvularcula ...
WP_013268687  532 -DQVRTPIvdtaHGENWVFRAKDLKGWWANAHHDRPGGVRSATPTAWVPGMKPIRLAEFGCAAVDRGGNAPNLFQDPKSA 610  Brevundimonas...
WP_015827109  584 -DQIRTPIfdggYGEHWTYRQKDIRGWHANAHYPRMGGVKAEQPTPWLSASKPVRFVEFGCSAVDMGPNQPNVFYDPKSS 662  Hirschia baltica
Q0AR61        559 -AQLRTPIsdavHGEDWVWRYKDLIGWWSNAHHDRPGGVRAVAPTSWIPASKPIWLTETGCPAVDKGANQPNVFIDPKSS 637  Maricaulis ma...
WP_013653655  568 -AGLRTPItdgaYGKPFVFRAKDLRGWWQNAHHERVGGVELAGPTPWQPASKPIWFTELGVPAIDRGANQPNVFVDPKSS 646  Polymorphum g...
WP_012562011  564 lDQRRMPIn---dP---FWAIKNIRWWWENDHVPRVGGVPTGPATAWVPRGKPIWFTEYGFPTVNCATNQPNVFIDPKSI 637  Afipia carbox...
6TEH_D        676 ESGLPHHSDGRRDELIQMQYLRAMTGYWGEAAR------NPVSAvYGGPMLDMSRAHVWAWDARPWPQFP 739  Rhodobacter capsulatus
WP_012563725  655 DGNVPYFSNGQRDDLIQRRMLEAVLGAFDPAFGgde-ahNPLSPvYGGRMVDVSGIHLWTWDARPYPIFP 723  Afipia carboxidovorans
2_pfamImport  233 EGGFPPFSNRGRDDFIQRRTLEMMTAAFDPAFGasd-adNPPACvPGGRMVDP-GIYLWTWDARPFPYFP 300 
1_pfamImport  233 ENALPPFSTGARDDLIQRRFLEAVLGTFAPDADea---dNPPAPlYGGRMVE--EAFAWTWDARPFPQFP 297 
WP_013300655  649 ESGRPYFSSGARDDRVQRRFLEAHLCYWGDPQN------NPISAhYGGAMIPREGIFAYSWDARPFPAFP 712  Parvularcula bermudensis
WP_013268687  611 ESALPPFSTAARDDVMQRRALEALLGHFATVEN------NPVSDvYGGPMLEAADA--WCWDARPYPAFP 672  Brevundimonas subvibrio...
WP_015827109  663 ENALPHYSSGARDDVVQRTAIEAFCNYWRS-----------------EDMLDEYGVSIWAWDARPFPAWP 715  Hirschia baltica
Q0AR61        638 ESAPPHHSTGARDDLIQRRYLEVLLAHWDDPAA------NPVSAlYGGPMIEPEWTHVWAFDARPWPDFP 701  Maricaulis maris MCS10
WP_013653655  647 ESQLPHFSAGARDDLIQRRALEAALSYWDDRHPelpmgdNPLSPvYGGRMVDAANLHLWTFDARPFPAFP 716  Polymorphum gilvum
WP_012562011  638 ESFAPYYSNRAVDRVVQRVAIEATEQFWSDPAN------NPASPlYDGPMV--GRRFVWCWDARPYPFFP 699  Afipia carboxidovorans
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