Conserved Protein Domain Family
DDE_5

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pfam13546: DDE_5 (This model is not part of the current CDD release)
DDE superfamily endonuclease
This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.
Statistics
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PSSM-Id: 520790
Aligned: 47 rows
Threshold Bit Score: 97.7902
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012409619       10 CLLPQINatTMRQ-LNQIIQAMLAMNGR--ITMLGISRWA----EMGGSYRTMLRFFH-TViPWAtlfWLFFRKHLwREQ 81  Nostoc pun...
Q82QZ2             22 DLYTCLT---RRGdTLFELCDAMLCEDGpvTSPVDLTLLA----EHRRGHGALYDALN-QG-RID---AVRLRKALaMLP 89  Streptomyc...
WP_014176311       22 DLFDCLT---ARGdELFELVDALLCADGpvTSPVNLTLVA----EHRRGHGAMYEALN-CG-NVD---VPRLRQVLaGLP 89  Streptomyces
Q82RB5             38 EFYSCLT---ARSdALFELADAVLCGDGpvRSLAELSLVG----EHRRGHGGLYAALA-RG-RID---AGRLRRALaEVP 105 Streptomyc...
WP_014692729       23 ELYQCMT---RRAdALFELTEALLCTEGpvKTLVGLSLAP----EHRRGHGALYDALN-HG-RID---VEVLRRQLaGLP 90  unclassifi...
WP_014692732       19 EFYRCLT---ARSdALFELSDAVLCADGpvKTLVDLTLTA----EHRRGHGALYDALN-HG-RID---LGRLRRALtAQP 86  unclassifi...
CCK24563           30 EFYECLT---ARRdELFELTDAVLCADGavKSPVDLTLLP----EHRRGHGAMYGGLN-HG-RLD---VDRLRAVLaGLP 97 
Q2JE07             23 EFYDCLT---RRAdALFETAEAVLCTDGpvRTLVDLTLAP----EHRRGHGALYDGLN-SG-RLE---IARLRRALaDLP 90  Frankia ca...
WP_012969867       19 RLYEHLG--ARRDaSLNLLDSLCANTQA--RSVVELSLNPaferDYTSLYAAIEAFTP-EPtARDpspSTGLSALVsEQI 93  Allochroma...
jgi:Cyan7822_5579  21 NLFNGLK---ARKeSLIELIDALSSNQQa-TSVVELSLNPlfrrNYNSLYKGIQEFFPyQTeDTEdeyLKQIKDLLkAVS 96 
WP_012409619       82 D-VYL--------LAGDEVVVSK-SGKQTYGVDRFFSSLVSKPI--NGLSFFVLSLVtvSERQSFPIRIEQAIKSdtQIN 149 Nostoc pun...
Q82QZ2             90 Q-PKAadg--rlvLAVDVSAWLRpDAPCSPD--RLFCHVSGRSG--RSSDQFIPGWP--YSFVAALETAR----TswCQL 156 Streptomyc...
WP_014176311       90 M-PRAadg--rlvLAVDVSNWLRpDAPTSAD--RLFCHVYGRSG--RSSDQFIPGWP--YSFVAALESGR----TswCQL 156 Streptomyces
Q82RB5            106 L-PRAadg--rlvLAVDVTCWLRpDAHTSPQ--RILCHTYGRG---KDQHIPVPGWP--YSIVCALEPGR----SswTAP 171 Streptomyc...
WP_014692729       91 L-PRAadg--rlvLAVDVSPWLRpDGNCSPQ--RSFCHTYGRG---KDEHRMIPGWR--YSIIAALETGR----TswTAL 156 unclassifi...
WP_014692732       87 L-PRFadg--rivLAVDVSPWLRsDAACSPE--RLFCHVYGRA---KSAAQFIPGWP--YSFVAALEPGR----TswTAM 152 unclassifi...
CCK24563           98 L-PRFdgg--rlvLAVDVSPWLRsDAPCSAD--RLFCHVYGRA---KTASQFIPGWP--YSFVAVLEPGA----TswTAL 163
Q2JE07             91 L-PAAadg--rlvLAVDVSPWLRsDASTSAE--RLFCHVHGRA---KNQSQLIPGWP--YSFVAALESGR----TswTAL 156 Frankia ca...
WP_012969867       94 --PAPsparpfwlLGVDTTPNPR-PFAATLADR----GVVYQPNpaPGNKPIAVGHH--YSVVAALPERSRCHPp-wVVP 163 Allochroma...
jgi:Cyan7822_5579  97 LtIPLsqsrhfnlFAIDTTPYQRpYSPVLAD--KKFIH-YPNPI--KGNKPINIGHT--YSVICALPDPTITGNKpwAVP 169
WP_012409619      150 sTraikkiksQEKRGRGRPKGS-KNKNKTEVILtselllikkmiNSLFEL-VANFIPLTYLVVDGHFGNNNAL-RMARQV 226 Nostoc pun...
Q82QZ2            157 lD--------AVRLGPDDDVAEvTAAQVRRVVT-----------DLIGQGqWEDGDDDILVVFDAGY-DAPRMaYLLDSL 216 Streptomyc...
WP_014176311      157 lD--------AVRLGPEDDVAEvTAAQLRRVVT-----------DLIEMGrWHFGDRDILIVFDAGY-DAPRMaHLLGGL 216 Streptomyces
Q82RB5            172 lD--------ALRLTPGDDTATvTARQLRDLLQ-----------RLITAGqWQTGDPDILIVADAGY-DAPRLgFLLRDL 231 Streptomyc...
WP_014692729      157 lD--------AVRLLPGADVTTvTCAQIRQFVD-----------RLTDAGqWQAGDPDILIVLDAGY-EAPRIaWLLRDL 216 unclassifi...
WP_014692732      153 lD--------VVRLGPADDATAvTATQLRGVVD-----------RLIACGqQQAGDPHILIVCDAGY-DVTRLaWVLRDL 212 unclassifi...
CCK24563          164 lD--------AVRLGPVDDATAvTATQLRGVVE-----------RLITCGqWQPGDPDIVIVSDAGY-DVTRLaWVLRDL 223
Q2JE07            157 lD--------AVRLGPTDDATAvTADQLRAVVG-----------RLIAAGhWHDGDPNILIVMDAGY-DVTRLaFVLADL 216 Frankia ca...
WP_012969867      164 lQ--------ARRVASNTTA---TAVAASQMAA-----------VLADPA-QPYATALSVQVADSHYSHAAYL-HALSAF 219 Allochroma...
jgi:Cyan7822_5579 170 lS--------GERVPSNDKAANvGNKQLK---------------EIFESS-SFSRQELSVLVADNFYSQRDFIgEQVNYK 225
WP_012409619      227 NLHIISKLRHDSALYVPYENPdsskRSRRqyGDKL-DYRNl--pDKYLCKSAIEd----eIKTD-IYQATLLHKEFSQP 297 Nostoc punc...
Q82QZ2            217 PVEVLGRMRADRVMRRPAPSPkeyaVSYPqgGRPPkHGKEfr-fARPDTWGDPDaetvqvTDRYgAAKAMAW-DRIQPR 293 Streptomyce...
WP_014176311      217 PVEVLGRMRSDRVMRRPTPSLkeyaLSYPrgGRPPkHGKElr-fAKPDTWGEPDaattqvTDRYgTARAMAW-DRIHPR 293 Streptomyces
Q82RB5            232 PVQVLARMRSDRVLRRav-----ppRLPHtqGRPPrHGGEfv-fGQPDTWDTPDtetvtdTRLYgQATARSW-NRLHPK 303 Streptomyce...
WP_014692729      217 PVEILGRMRSDRVLRRAtp----arVYKPlgGRPTrHGGEfv-fGNPATWDIEHavthtdTRLYgQVRAQAW-DRLHPR 289 unclassifie...
WP_014692732      213 PVEVAGRIRADRVLRLPap----pyEHSPsgGRPPkHGGEfd-lKDSATWPEPAattineTISYgKAEARAW-DRLHPR 285 unclassifie...
CCK24563          224 PVELVGRVRSDRVMRLPkp-----lRQPGtnGRPPkHGPEfr-fAKPETWPEPAvttvtdTANYgKAETQAW-DRVHPR 295
Q2JE07            217 PVEVLGRIRSDRVLRLak-----ppRQPGtnGRPPkHGPEfa-lDRPATWPELQhttttnTSRYgTATATSW-NRLHPR 288 Frankia cas...
WP_012969867      220 SNHVVIARSAGNRVYSra-----ppATDGacGHPIwYGEAfr-lADPETWGSPCq-------------sAEWPDQTASG 279 Allochromat...
jgi:Cyan7822_5579 226 NLVTITRVRSNRVFYRQFie---kiTTQKksGHPR-WYGDkfdlKDENTWTQPN------EVTQcVFTTKTGRQLTTTI 294
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