6MLT


Conserved Protein Domain Family
FG-GAP_3
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pfam13517: FG-GAP_3 (This model is not part of the current CDD release)
Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).
Links
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Statistics
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PSSM-Id: 493459
Aligned: 578 rows
Threshold Bit Score: 25.2623
Created: 21-Aug-2024
Updated: 4-Feb-2025
Structure
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Program:
Drawing:
Aligned Rows:
Download Cn3D
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
6MLT_A         104 DLDGDGLIEIVST---SALT-------------PYINILDHqGNIKK--QL--LKSAS-GWRSVgdIALADINGDGNIEI 162 Vibrio choler...
174_pfamImport   1 DFDGDGHADIYAV---QNSYapspgvgrfagglSQLLRGDGrGSFTPv-PVvdTGLMV-PGDAKa-LVVTDLDGDGWPDF 74 
WP_013009671   222 HAKNDKNIYIAAA---TKKR-------------IDLYEFTGtG---Fi-PA--GSVDKeFDNIQn-IELADLDGDSVDEL 278 Denitrovibrio...
211_pfamImport   1 DFDGDGWPDIIALfahAQEG-------------IWLFTNDRkGGFSEk-PL--LRFPP-VYGSSs-FQLTDFNGDGLPDI 62 
48_pfamImport    1 DMNGDQKPDIVVLmaqAYEQ-------------LVIYYNKGnGIFERe-KV--LEFPP-THGVSy-FEMADFNGDGFEDV 62 
212_pfamImport   1 DLNNDKKPDIVALmaqAWEQ-------------VSFFYNLGnGKFREk-TV--LQFPP-SYGMSy-FEMADFNRDGFQDI 62 
Q7UP04         372 DLNGDGHLDFVALisqEHEA-------------IEAFFNDGtGQFRNv-VL--YSAPDpSYGSTg-IELVDLDGDDDMDV 434 Pirellula sp.
Q7UY50         345 DLNEDGLMDFVAAisqGYET-------------VEAFLNDGeGGFDRe-VI--FAAPDpAFGLSg-IQLVDLDQDDDLDV 407 Pirellula sp.
188_pfamImport   1 DVDLDGDLDIAAF---GREG--------------HLLLNDGaGRFALq-PR--VWTAAtGAEIAg-VELADLTGDLVPDL 59 
182_pfamImport   1 DYDGDGRMDFAALisqEWEE-------------VHLFLNRGeGRFEEsiVW--GSTNE-DYGSSg-LEAIDLNQDGKPDL 63 

6MLT_A         163 L 163 Vibrio cholerae O1 biovar El Tor str. N16961
174_pfamImport  75 L 75 
WP_013009671   279 F 279 Denitrovibrio acetiphilus
211_pfamImport  63 L 63 
48_pfamImport   63 L 63 
212_pfamImport  63 L 63 
Q7UP04         435 L 435 Pirellula sp.
Q7UY50         408 L 408 Pirellula sp.
188_pfamImport  60 L 60 
182_pfamImport  64 L 64
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