Conserved Protein Domain Family
GAF_3

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pfam13492: GAF_3 (This model is not part of the current CDD release)
GAF domain
Statistics
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PSSM-Id: 493439
Aligned: 27 rows
Threshold Bit Score: 45.0419
Created: 21-Aug-2024
Updated: 23-Aug-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011939198 325 SGDELLQSILCGYADTFGMGGcALFLYDgERRLFRTA-ASLe-mETravefgrddTI-I--EHMTEKSWVVNMG--E--G 395 Geotalea uranii...
WP_015763075  28 SVDEVVSMTLEAMSLLFDAADnTFVEVRnD--DLQVV-HST---NPa-------lSVgE--APTSVARRAYESRttE--V 90  Halomicrobium
1_pfamImport   1 SMDEKIEQGLEYGQSLFGMEIsFVGQVReGICRVIHV-LNSdtlQKns-----rlVM-D--NRCCLKQLAQNEQ--G--V 67 
Q8REK9        68 NIDKIVDTLADAYFVLTATTRiSIYLWEgE--KL-VN-KKIk-gSIdf-----teSF-S--YPMNLLEKFTNED--YtkI 132 Fusobacterium n...
Q67L27       170 EQPQRLGGLLERACRLLDLDLaAWGMLDeYREELVWN-AAHgpgADll-----lgPL-RtvGDSPLVRTL-MTG--R--I 237 Symbiobacterium...
WP_011714534 200 EPALVMNGAADIVAQVLNPKKfSLFALDkGGLKMRIS-RGWd-gDErf-----ktSL-P--ESSALYQRVVGQH--E--F 265 Magnetococcus m...
WP_015892583 220 RQGLTYDSAQKVAEEILRTTRvAAVAITdTRSVLAHVgAGSs--HHvv-----geGI-T----TKATREVLSTK--E--V 283 Brevibacillus b...
WP_012634484  41 VFKQIIEAAFDFINELLLVNNsIVYVLEeGKYTAKKV-KGF---KDypkeieatsTL-E--NLAALYGNVLYEK--D--K 109 Ruminiclostridi...
Q0W8F5       262 DIQEMFATVLRQTNSLVSASAsAIFIDEtERPGIAVL-AAYd-nEAap------qAR-F--RQEAPSHALHEGG--E--L 326 uncultured meth...
Q0W5M6       279 SIEEMLNEALKESVELLEADFgVLYLFEtQERYAQLA-AIv--aKPgs-----ekAI-R--CRQVLHDVAIPLG--T--V 343 uncultured meth...
WP_011939198 396 IfE------PSdh----cKDFFRLNDIsFVIPLFLn--gVMDGFIVLGKPV-NRDe----vY-NY-EDYDLMKTLARQTS 456 Geotalea uranii...
WP_015763075  91 AsG------ADar----aATDTETTAA-LAVPATIv--dEVTAVLVMRSTS-RSE------F-DD-TVVRPMEILASHAA 148 Halomicrobium
1_pfamImport  68 VsPllsaccAEmv----cAQLHQFQAL-ICAPLVVe--hQSYGVLAFASMQ-PFQs-----LdSR-RDEALLELLAQWVG 133
Q8REK9       133 YsD------LSr-----kITILNDEKV-IITPLKVk--eRQLGVILLVQNK-DQ-------I-LE-INSEMISALGIQAS 188 Fusobacterium n...
Q67L27       238 YrY------PGagrpdphLAPLPLRSF-TAIPYRLg--pRSQGVLLGASRR-PGA------L-VD-DDLRLFNHLGAYLS 299 Symbiobacterium...
WP_011714534 266 LsV------VKsd----qRDALDGEGM-LVGPLLSketgTVSGVMKLEELG-FMD------L-NV-STVENFKALCEWIG 325 Magnetococcus m...
WP_015892583 284 KiA------QTkeeigcrETNCPLRYA-ILVPLMRr--rEVAGVLKLYQDR-SRK------L-SA-VDLELVRGLGNLIS 345 Brevibacillus b...
WP_012634484 110 I-A------RFfd----mEMVSNMGIN-AVVPLIIe--eHLYGFIMINGKD----------F-VD-DEYIISESLMRLIN 163 Ruminiclostridi...
Q0W8F5       327 VtV------DVnpg-dwlEPGSGDGKL-ILVPLESm--aRKVGIMALFYPD-GQAssaggkW-DR-SHAPLLVSIGSHLG 393 uncultured meth...
Q0W5M6       344 StG------VQsi-------fEDSIVA-TVVPITAr--gNLLGLMAFHVSGdCKA------V-EGcDRAAMLIGAGAQIG 400 uncultured meth...
WP_011939198 457 SALLN 461 Geotalea uraniireducens
WP_015763075 149 TAISN 153 Halomicrobium
1_pfamImport 134 THLAQ 138
Q8REK9       189 IAIDN 193 Fusobacterium nucleatum subsp. nucleatum
Q67L27       300 TAAEN 304 Symbiobacterium thermophilum
WP_011714534 326 TSLDN 330 Magnetococcus marinus
WP_015892583 346 SQLEL 350 Brevibacillus brevis
WP_012634484 164 TALEN 168 Ruminiclostridium cellulolyticum
Q0W8F5       394 TAIDC 398 uncultured methanogenic archaeon
Q0W5M6       401 IAVEN 405 uncultured methanogenic archaeon
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