Conserved Protein Domain Family
RNase_H_2

?
pfam13482: RNase_H_2 (493429 is an unknown moldel)
RNase_H superfamily
Statistics
?
PSSM-Id: 493429
Aligned: 54 rows
Threshold Bit Score: 102.685
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q18J31        305 VFIDIETDGL--AA--STAWLIGVLDGSA-SsGN----YLA-FRQPDL-NAPSAHLEafmtwltgSARR--RPVVAWNgy 371  Haloquadratum...
WP_012408093  303 LYFDIEAQ-----PdlDLNYLLGVLVVDRlAnTEq---FYS-FLADKP-EDEELVWQqfl---dlVWQYpeAPIYHFCvy 369  Nostoc puncti...
Q2JK26        335 LYFDIEAD-----PrhNVAYLLGLLVVEQ-AeGKkvasYHS-CLAAEP-REERQAWEqfl---qlAQRY--PDAPIYHfh 401  Synechococcus...
Q31LI8        287 FFFDIEAQ-----PdlDLCYLHGVLIRDR-RqPEs--qFRP-LLAEQP-DQEADTWQqll---qlLDRH--PQAPVYHfc 351  Synechococcus...
WP_012165571  304 LYFDIEAE-----PslNLAYLHGVLVVDReNqTEt---FYP-LLADQP-HQEEQAWQqfl---dlVLAY--PQAPIYHfc 368  Acaryochloris...
WP_011993706  224 IYLDIESY-----TpfDFDYLFGVLE-NG-RyIPf---LAT-DPSKERyTFENIVKY--------LEKRqqPIYHFHNye 284  Fervidobacter...
WP_011712949  316 LFFDMEGDPL--YPd-GLEYLFGFYFTES-GqPV----FKPfWAHDHK-EEKRALQEvmdflvthLRAH--PDAHIYHyn 384  Magnetococcus...
Q7VYJ1        321 MFFDMEGDPL--EDg-GLEYLFGLYVIDD-GaERf---VPF-WAHDRR-QEKQAFEAfmdfvaerLRRH--PDAHIYHya 389  Bordetella pe...
WP_012161636  287 IFIDFE--GL--NDe-NYTYLIGLCITEK-DkNRf---LSF-WADSQA-QEVSIFLSmi----eiISPL--TNFTAYYyg 349  Acaryochloris...
WP_012414889  314 LYFDFEATETftKDneSFVYLIGVWDAEE-NkFIs---FVA-KNKEE---EEKIFSDff----dyIKEP--QDTILYHwt 379  Elusimicrobiu...
Q18J31        372 GFD-FDVIHDQL-----QTH-CPSyld----dweNR--YTFDPLY-WG-RT-QGNaefpgrTN-KLEHVATALGWEPTTq 434  Haloquadratum...
WP_012408093  370 EFDtVKRLAKLYn---tP-----Yasv----rpvLN--RFVDVYE-QL-TQ-SVAlp---vESyALKAIARWLGFEWREk 429  Nostoc puncti...
Q2JK26        402 GFE-VQTCRRLGe----QYR-TDPrql----rqlLQ--RFVDLQA-WV-QR-SVVlp---iESySLKNIARWLGFQWRLp 463  Synechococcus...
Q31LI8        352 SFE-VDSLRRLGq----RYG-CSTrrl----ealLT--RFIDIHA-VL-TR-SVLlp---tESyALKSIARWLGFDWRDt 413  Synechococcus...
WP_012165571  369 AYE-VQTVERLAa----LYG-SPDtii----qplLE--RFIDLHA-HVtHT-VVLp----vESyTLKLIARWLGFQWRNs 430  Acaryochloris...
WP_011993706  285 IMR-FKKLSKKY-----GVN-LSK----------ELlsRFVDVYK-IY-AG-HVAlp---iPSySLKSIARFFGFNWRtd 341  Fervidobacter...
WP_011712949  385 HYE-ETALKRLAs----QYA-TREaevd--dllrGR--KLVDLFK-VV-REaIRVse---pKY-SIKNLEAFYMEKRDAe 448  Magnetococcus...
Q7VYJ1        390 PYE-ATALKKLMs----LHG-TREaevd--hllrAG--KLVDLYR-VV-RE-GLRis---ePSySIKYVERFYLPRRAGe 453  Bordetella pe...
WP_012161636  350 SYE-IRALKKLSkklddS-----YaniinrlienSV--NILSIFNsNI-YP-PTY------TN-SLKDIAKYIGFSWHDk 412  Acaryochloris...
WP_012414889  380 EYE-VKKMRSLAs----KYPdIAQkln-----alAN--MCLDLKI-LI-GK-AFYlp---sPSlSLKAAAPAFGFNWRQg 441  Elusimicrobiu...
Q18J31        435 ginGRRVAELYVDWRerMNTAdnpqtvsqpPWNRLEAYCEDDVRALARIYEALT 488  Haloquadratum walsbyi DSM 16790
WP_012408093  430 easGAKCIYWYDQWLetGDRT---------LLEIIQSYNEDDCRATHRVKDWLV 474  Nostoc punctiforme
Q2JK26        464 danGAQSIYWYSQWLetRERR---------YLEHSIIYNEDDCRATHRLKDWLS 508  Synechococcus sp. JA-2-3B'a(2-13)
Q31LI8        414 eanGSQAILWYDYWLetGDRT---------WLDRILLYNEDDCRATAIVKDWLA 458  Synechococcus elongatus PCC 7942
WP_012165571  431 eanGAQSIYWYSEWLstGDRD---------FLDTIVEYNEDDCQATYQIKNWLA 475  Acaryochloris marina
WP_011993706  342 -inGLSVINYYREYLatNNKS---------ILKEILKYNEDDVRATEFIVKKLN 385  Fervidobacterium nodosum
WP_011712949  449 vatAGDSIVVYEEWRqsQDPQ---------LLQNISDYNEDDCRSTLLLRDWLL 493  Magnetococcus marinus
Q7VYJ1        454 vtnAGASIVYYERWKatDEPR---------LLQDIADYNRDDVISTWRLRDWLc 498  Bordetella pertussis
WP_012161636  413 nasGLQSIYWRKKWEltGDKA---------YKDALIQYNLEDCLALQLLKKWIN 457  Acaryochloris marina
WP_012414889  442 dcgAMDSMVFYTNWCktGDNN---------LIEKVLMYNEDDCKAMIYLDEYLQ 486  Elusimicrobium minutum
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap