7JFN,3EAF,4M88


Conserved Protein Domain Family
Peripla_BP_6

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pfam13458: Peripla_BP_6 (This model is not part of the current CDD release)
Periplasmic binding protein
This family includes a diverse range of periplasmic binding proteins.
Statistics
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PSSM-Id: 520744
Aligned: 114 rows
Threshold Bit Score: 115.499
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7JFN_A         11 PLKIALVETLSGPQASTGLLYRAAVLYQLGKIne-agGFN---GE--KIQILEYDNQGGPVGAADRVKAAIA---DG-AQ 80  Brucella ovis ...
3_pfamImport    1 VVRIDGFGAESGVLRPFGANSEAALRAAAKEIne-agGVKlgdGArgRIEISYHDDSCAPTEGVDVVRRLAQ---TN-AL 75 
WP_008522984   27 vLKIGVLGVMSGSAASWGLVNRYCAEASAEMIne-agGFEi-gGEkyKIKIVSVDDRNDPKVAISGAERLIYe--EK-IH 101 Jonquetella an...
Q67RK1         31 PIKVGGIFDITGATGDVGKPHADGARAWFDYLnnelgGVN---GR--KVELVWGDYAYQVPKAVELYKKYVNe--DK-VV 102 Symbiobacteriu...
Q2RNJ5         28 SVFVGHLKDVTGATGFVGKLYGEGVNDALVWIna-hgGID---GT--RLDFESVDYAYEVPRAIALYKKWTSq--NK-MV 98  Rhodospirillum...
5_pfamImport    1 -IAIGHLADLTGATASVSKPFAAGVADALNYIna-ngGVK---GD--KIAFETVDYSYQVPRAMAQYKKWTSe--SK-LA 70 
WP_012693516   22 ATTLVWSGAITGPTSDAGSSYAAGVEDYCKYAns--qKML---TV--TLNCVVRDDQYNNANTQRIFEEFVGs--QN-VP 91  Deinococcus de...
2_pfamImport    1 SQYIPLPTYRVGAYASSGELWWAGERDYFRYInevegGVE---GV--KLNYEEFETEWSPDRTVEVYERVKAgkdGS-PL 74 
WP_011831884   28 SQYFPLLTFRTGPYAPSGTPWANGFVDYFKLVnl-egGIN---GV--RVLWEECETGYATDRGVECYERMKGk--NG-GA 98  Sphaerotilaceae
jgi:Xaut_5035  29 GQFIPVLSYRTGPFAPNGIPWANGIVDYFELInqrdgGIN---GV--KIIYEECETGYATDRGVECYERLKNk--GPtGA 101
7JFN_A         81 IIVQGSSSAVAGQITEDVRKYNlrnkgkeV---------LYLN---LG---------AealeLT--------GS--KCHF 129 Brucella ovis ...
3_pfamImport   76 IAVGTTCSPVVQAVFGSLQKKA-------GdtadsglrfPVFT---DV---------A----MKi------gLA--KTSD 124
WP_008522984  102 YIIGPNIAPTSMAIVPVLEKGG-------A---------ISIPyafPK---------A----LY--------TP--PASN 142 Jonquetella an...
Q67RK1        103 AILG-WGTGDTEAMKELIAQDK-------I---------PYLS---GSfa------eS----LT--------DP--SVTP 142 Symbiobacteriu...
Q2RNJ5         99 AL-QGWGTGDTEALISFVAKDK-------I---------PVLS---GSys------gH----LTdptgknpkTQ--KPAP 146 Rhodospirillum...
5_pfamImport   71 A-IQGWGTGDTEALVSSVAKDE-------I---------PYFS---ASysghltdpqG----KT--------SA--KAAP 116
WP_012693516   92 VFLGY-ATGAMLQIKGVVQETK-------I---------PTLP---ASyh------iG----LI--------DP--PNNQ 131 Deinococcus de...
2_pfamImport   75 AFFFTHGTPATYALLEKAAADK-------I---------PLID---PAgg-----ktE----TV--------DG--TVFP 116
WP_011831884   99 TVLQTMSTGITFALTERGAADK-------I---------PILT---PGyg-----isE----SA--------DG--EVFK 140 Sphaerotilaceae
jgi:Xaut_5035 102 AFVNPLSTGITFALTEKAPVDK-------I---------PLIT---AGf-------gR----SE--------SKdgSVFT 143
7JFN_A        130 YHFRFSPNAAIRFKTVAQGM-KDKGi----lGE------RAY-SINQN-YSWGVDVENTVVANAKEIGyEVv--DKTLHE 194 Brucella ovis ...
3_pfamImport  125 WSFRNIPDENAMYTDVFAWVrREHPd-----AR------TLYgGVEQNfVHSSQTWYQVMKPRAQAAGfEv--lGETRWL 191
WP_008522984  143 SILGMIASY-QAGPVIFKYLmKEHG------IK------TIA-FVARN-DTESLTMREESLQSAKELGlEvl-sDKDTYE 206 Jonquetella an...
Q67RK1        143 YNFIVSSTYSQQARVLLDWIkEQKP------DA------KVG-IIFHD-SPFGQAPVADAKAYAQQIGlTw--vGEAALP 206 Symbiobacteriu...
Q2RNJ5        147 YNFFYGPSYSDACRALVQWAeGDWK------AKgkegkpKFI-HAGDN-HPYPNAPKEACADFATELGfEv--lPPVVVS 216 Rhodospirillum...
5_pfamImport  117 YNFFYGPSYTDGCRGLVEWAaADWK------KKggkgqaKFV-HMGDN-HPYPNAPKDACGAYAKEKGfEi--lNPIQYS 186
WP_012693516  132 YMFLPVSSYSENMVALLEWVaKKER------GA------KVA-LVVNP-SPFGRDPVVDARKAATRLGlNItdvQE--VG 195 Deinococcus de...
2_pfamImport  117 YAFPLLFSYYSQASTGINYIaSKVGgldklkGL------KIA-TLYHD-SAYGRASQPAIELLAKKYGfEn--iQI-PVA 185
WP_011831884  141 WSFPIAGTHWASADTQVQYVaQKAGgldklaGK------KIT-LLYHD-SPYGKEAIPVLTARAKKHGfEl---vTIPVP 209 Sphaerotilaceae
jgi:Xaut_5035 144 WNFPLIGTYWTAADVAVQYIaKEFGgpdklkGR------KIV-LLYHD-SPFGKEPIPVLEALAKKYDfQLtl--iPVAN 213
7JFN_A        195 VNKiQDFSPYVAKIQAANVDT-VFTGNWSNDLLLLMKAASGAGLKaK---FATSFLD-QPGNIGNAGaIAEG-HIVSTP- 267 Brucella ovis ...
3_pfamImport  192 LDD-TNFADQVRDIKQKNADV-VVISAHPYSACGVLKELQRQNVHpKv-lVGLTSSS-TPELMKICGpAAEG-LVIPTS- 265
WP_008522984  207 TGT-TDFFPVMTSIVAKNPDLlVLSGPAPADTPLLIKTARELGYQgf--mCAENAQD-AKVISELAGdAANG-FISVGGa 281 Jonquetella an...
Q67RK1        207 GAA-ADAVTQVLDLHNKGVEFiMIQNVVKG-TAQVLKAVQQQGLRdk-iqVVGMTYSvDETLLTAAGdAAEG-FVGTPAf 282 Symbiobacteriu...
Q2RNJ5        217 LKP-GDFKAQCLTIKQSGANY-VYVANLGPSVVSLVKSCKTVGTDaQymaN-IWGGD-SETQKTLGAdGDGY-VFVAAN- 290 Rhodospirillum...
5_pfamImport  187 LKP-GDFKAQCLSLKESGADY-AYLANTSGSTISLLKSCETVGTKaQf-mGNIWGMD-EAGLKASGE-AANG-MTWVVA- 259
WP_012693516  196 GNN-LDNTALLKRLESQGVKY-VINQNTAGPVANILKDAKRLNLLgKmqfMGAHYTG-GEDLTKLAGdAAKG-FIWATS- 270 Deinococcus de...
2_pfamImport  186 DPG-NEQSPQWRQIREQKPDW-VFLRTWGVSTVVALKTAQRFGFPaDhiiGDVWAGS-ESDAIPAGA-AAIG-YSALAP- 259
WP_011831884  210 HPG-VEQKSAWLQIRKSRPDF-VLLWGWGVMNSTALKEAQATGFPrNrvvGVWPSGS-DSDVKGVAGaEGYS-AVLILP- 284 Sphaerotilaceae
jgi:Xaut_5035 214 -PG-VEQKSQWLQIRQLRPDY-VVMWGWGVMNPTAIQEAANVNFPrEkmlGFWFAGA-EPDVVPAGAqAVGYkALMLQH- 288
7JFN_A        268 FN-PEANGEASMAFAEDY--KKVT----Gh----yPSYVEPA---AVFGLQLFG-EALKNVkp-----geGk-------- 319 Brucella ovis ...
3_pfamImport  266 FA-PI--NARAER-AAKE--TAAY----Gg----yADLHSMA---AYEILYMIK-TAIETQ---------Gvlakpdsvq 318
WP_008522984  282 ST-PEIRSDYMNEFIKRY--EKIA----Ge-----WNDEAGT---KVYALDYIL-NTIKAA---------Gpe-----ai 331 Jonquetella an...
Q67RK1        283 VF-PYDEGPGIDE-AVAY--AEKI----Glkr-edLTQKWLQ---GWVFGRILT-EAIRRA---------Ge-------d 333 Symbiobacteriu...
Q2RNJ5        291 AF-WGDDAPGLA-LVREI-----A----Gse--tpRTHHYIR---GVCSTFYMK-EAMEWAka------hGg-------- 339 Rhodospirillum...
5_pfamImport  260 AT-TWADTTPGMTLVREI--SKLSdp-sGke---eRPSHYMR---GICSAFYMK-EAMDMAtt-----mpGg-------- 315
WP_012693516  271 YYlYDEGDRPGIQLVKKI--GAQA----GrkidtiRSVHYTS---GMLAAAIAI-EAMKRG---------Gk-------d 324 Deinococcus de...
2_pfamImport  260 YP-GGTDFEIHKRLKAEI--LDKG----Ksdl-rdPKLFGAV---NYNIGLVNAaLAVEALrtgykhfgpKp-------- 320
WP_011831884  285 -G-PALDSKIAKKVVDKL--HAKGegsgPke--evGSALYMR---GLMNAMFAV-EGVRRAqqk---fgiGq-------v 344 Sphaerotilaceae
jgi:Xaut_5035 289 GA----GRARVHDDLDKYvyGKGF----Gks--nhTDSSGVLfnrGMVGAMLGV-EGIRTAmak---fgnKp-------- 346
7JFN_A        320 INTTDIA----------LAIENAS-V-----K--TPM-----------GDYSMRSDDHQAKFPMVVQEVSKKAR 364 Brucella ovis ATCC 2...
3_pfamImport  319 ADRDKLR----------EGLAAIRtA-----D--GLL-----------GPVG-RTAERESVKPFVLVQAH-DSV 362
WP_008522984  332 NDVEKFK----------AAMNTFS-I-----P--NPYikgdaaplhyiGE-KYFQQKRQFSVPMVIVTYE-GGe 385 Jonquetella anthropi
Q67RK1        334 VTGETLK----------AAFETFNeL-----DlgGIG-----------APLTFTPTDHGGMDRARIYQVQ-NGR 380 Symbiobacterium ther...
Q2RNJ5        340 LTGESIR----------NAMYARKdWvpkglE--GVC-----------IPSTWTPEDHRGMTKVFIYQMQNGSE 390 Rhodospirillum rubru...
5_pfamImport  316 VTGANIK----------AAMYKKSnWvpaglE--GVC-----------LPSTWKADDHRGTTQVMVYQAA---- 362
WP_012693516  325 ITAASVY----------KGLTSMNgS-----R--AFNpgf------svGPVTFSAKDHVGAESLRLLEADATGN 375 Deinococcus deserti
2_pfamImport  321 LNGEQGRwafehltiddKRLEQIG-F-----K--GLL-----------QPIKITPTDHEGGGAARIQSWD-GKK 374
WP_011831884  345 MTPAQARwgyenlqidqKRLEELG-I-----A--DVM-----------RPTATSCKDHMGPSAARAYTWN-GTT 398 Sphaerotilaceae
jgi:Xaut_5035 347 LTGEQVRwgiehlaldeNRLKELG-F-----E--GMI-----------SPIKISCSDHEGSHTSRIQQWD-GKQ 400
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