4M88,3EAF


Conserved Protein Domain Family
Peripla_BP_6

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pfam13458: Peripla_BP_6 (This model is not part of the current CDD release)
Periplasmic binding protein
This family includes a diverse range of periplasmic binding proteins.
Statistics
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PSSM-Id: 493406
Aligned: 111 rows
Threshold Bit Score: 118.547
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4M88_A         4 QIVLGQIGPFTGPL--AADAAGLNQGIKAYLAQAnk-agGIR---GQ--KLTLFEADDRFSGEGFAEQFPKAXE---KK- 71  Verminephrobact...
WP_015875716  31 VVRIDGFGAESGVL--RPFGANSEAALRAAAKEIne-agGVKlgdGArgRIEISYHDDSCAPTEGVDVVRRLAQ---TN- 103 Burkholderia gl...
Q162M3        22 EITIGFAIAKSGWV--EAYDAPAVAAARIRIDEIna-agGLL---GK--QIRWIEADTKSDQAQSASAGLQMVD---EG- 89  Roseobacter den...
Q0RLW8        58 PVTIGLISASASDSvlSAQFQRIEQGMQMALKYAntyrgGIA---GR--PIALFICQGGETPAGTQDCANQMVN---RG- 128 Frankia alni AC...
Q2RNJ5        28 SVFVGHLKDVTGAT--GFVGKLYGEGVNDALVWIna-hgGID---GT--RLDFESVDYAYEVPRAIALYKKWTSq--NK- 96  Rhodospirillum ...
WP_024078457  23 dIAIGHLADLTGAT--ASVSKPFAAGVADALNYIna-ngGVK---GD--KIAFETVDYSYQVPRAMAQYKKWTSe--SK- 91  Magnetospirillu...
WP_012693516  22 ATTLVWSGAITGPT--SDAGSSYAAGVEDYCKYAns--qKML---TV--TLNCVVRDDQYNNANTQRIFEEFVGs--QN- 89  Deinococcus des...
WP_015918307  27 SQYIPLPTYRVGAY--ASSGELWWAGERDYFRYInevegGVE---GV--KLNYEEFETEWSPDRTVEVYERVKAgkdGS- 98  Rhizobium/Agrob...
WP_011831884  28 SQYFPLLTFRTGPY--APSGTPWANGFVDYFKLVnl-egGIN---GV--RVLWEECETGYATDRGVECYERMKGk--NG- 96  Methylibium pet...
WP_011993137  29 GQFIPVLSYRTGPF--APNGIPWANGIVDYFELInqrdgGIN---GV--KIIYEECETGYATDRGVECYERLKNk--GPt 99  Xanthobacter au...
4M88_A        72 PLALISPXGSAAIKRXLDdkLLDTAPV---------VVVNgvPG---------AESl-------R-T--PGHPKFFHVRA 123 Verminephrobact...
WP_015875716 104 ALIAVGTTCSPVVQAVFG--SLQKKAGdtadsglrfPVFT--DV---------AMKi------gL-A--KTSDWSFRNIP 161 Burkholderia gl...
Q162M3        90 ADMLIVSCDYDFGAPAAL--AAEGAGL---------NSFF--LC---------AEDik-----aGiQ--GVGPNSFSASV 140 Roseobacter den...
Q0RLW8       129 VAAVISPFTAN-GASVVP--VLTAAKI---------PYVS--LS---------GTSt-------E-E--LTKPGAFSLTG 175 Frankia alni AC...
Q2RNJ5        97 MVAL-QGWGTGDTEALIS--FVAKDKI---------PVLS--GSys------gHLTdptgknpkT-Q--KPAPYNFFYGP 153 Rhodospirillum ...
WP_024078457  92 LAA-IQGWGTGDTEALVS--SVAKDEI---------PYFS--ASysghltdpqGKT--------S-A--KAAPYNFFYGP 146 Magnetospirillu...
WP_012693516  90 VPVFLGY-ATGAMLQIKG--VVQETKI---------PTLP--ASyh------iGLI--------D-P--PNNQYMFLPVS 138 Deinococcus des...
WP_015918307  99 PLAFFFTHGTPATYALLE--KAAADKI---------PLID--PAgg-----ktETV--------D-G--TVFPYAFPLLF 149 Rhizobium/Agrob...
WP_011831884  97 GATVLQTMSTGITFALTE--RGAADKI---------PILT--PGyg-----isESA--------D-G--EVFKWSFPIAG 147 Methylibium pet...
WP_011993137 100 GAAFVNPLSTGITFALTE--KAPVDKI---------PLIT--AGf-------gRSE--------S-KdgSVFTWNFPLIG 150 Xanthobacter au...
4M88_A       124 GDKQEIEEIVSH-AQXLG------XS------KLA-TLYQD-LPTGTSGXAVV-QEAVKTVpGgKielnG-VKSGPDAAA 186 Verminephrobact...
WP_015875716 162 DENAMYTDVFAWvRREHPd-----AR------TLYgGVEQNfVHSSQTWYQVM-KPRAQAA-GfEv--lGeTRWLLDDTN 226 Burkholderia gl...
Q162M3       141 LAAVQGATVAEWsVQERD------AK------TGY-VLLDTtIEYNKGICTGF-DWMFPKA-GgEi--vGtDTFLNGDAS 203 Roseobacter den...
Q0RLW8       176 GFSVGLAAFAAY-AHDHG------VR------KMA-MLATD-GPAVLQAVNGIgGIVFRKA-GvGf---QtIAVPVGTAD 236 Frankia alni AC...
Q2RNJ5       154 SYSDACRALVQWaEGDWK------AKgkegkpKFI-HAGDN-HPYPNAPKEAC-ADFATEL-GfEv--lPpVVVSLKPGD 221 Rhodospirillum ...
WP_024078457 147 SYTDGCRGLVEWaAADWK------KKggkgqaKFV-HMGDN-HPYPNAPKDAC-GAYAKEK-GfEi--lNpIQYSLKPGD 214 Magnetospirillu...
WP_012693516 139 SYSENMVALLEWvAKKER------GA------KVA-LVVNP-SPFGRDPVVDA-RKAATRL-GlNitdvQe--VGGNNLD 200 Deinococcus des...
WP_015918307 150 SYYSQASTGINYiASKVGgldklkGL------KIA-TLYHD-SAYGRASQPAI-ELLAKKY-GfEn--iQi-PVADPGNE 216 Rhizobium/Agrob...
WP_011831884 148 THWASADTQVQYvAQKAGgldklaGK------KIT-LLYHD-SPYGKEAIPVL-TARAKKH-GfElv---tIPVPHPGVE 214 Methylibium pet...
WP_011993137 151 TYWTAADVAVQYiAKEFGgpdklkGR------KIV-LLYHD-SPFGKEPIPVL-EALAKKY-DfQlt--liPVAN-PGVE 217 Xanthobacter au...
4M88_A       187 LAAAARQIAA--LGAQGVLVIGPPPFIVAGIAALRKADVTqP-LFVLSYVSAAQIVKVVGVaGARG-VGIV-Q--AF-PD 258 Verminephrobact...
WP_015875716 227 FADQVRDIKQ--KNADVVVISAHPYSACGVLKELQRQNVHpK-VLVGLTSSSTPELMKICGpAAEG-LVIPtS--FA-PI 299 Burkholderia gl...
Q162M3       204 IASQITRIKSlaEEPDVIMLCSYIPGAASAVRQIRAAGINs--TILNGSAVDGSYWLDAAP-DLSN-FIVPvQgsIY-GD 278 Roseobacter den...
Q0RLW8       237 MTPQMQAAVK--GGADAISMVGDLTFCTSWLQAYQTLNLDlPrY-IINTCIDPTTLKAYKP-VIAG-SVMTaT--AT-TD 308 Frankia alni AC...
Q2RNJ5       222 FKAQCLTIKQ--SGANYVYVANLGPSVVSLVKSCKTVGTDaQyMAN-IWGGDSETQKTLGAdGDGY-VFVAaN--AF-WG 294 Rhodospirillum ...
WP_024078457 215 FKAQCLSLKE--SGADYAYLANTSGSTISLLKSCETVGTKaQ-FMGNIWGMDEAGLKASGE-AANG-MTWVvA--AT-TW 286 Magnetospirillu...
WP_012693516 201 NTALLKRLES--QGVKYVINQNTAGPVANILKDAKRLNLLgKmQFMGAHYTGGEDLTKLAGdAAKG-FIWAtS--YYlYD 275 Deinococcus des...
WP_015918307 217 QSPQWRQIRE--QKPDWVFLRTWGVSTVVALKTAQRFGFPaDhIIGDVWAGSESDAIPAGA-AAIG-YSALaP--YP-GG 289 Rhizobium/Agrob...
WP_011831884 215 QKSAWLQIRK--SRPDFVLLWGWGVMNSTALKEAQATGFPrNrVVGVWPSGSDSDVKGVAGaEGYS-AVLIlP---G-PA 287 Methylibium pet...
WP_011993137 218 QKSQWLQIRQ--LRPDYVVMWGWGVMNPTAIQEAANVNFPrEkMLGFWFAGAEPDVVPAGAqAVGYkALMLqH--GA--- 290 Xanthobacter au...
4M88_A       259 -PNDkxlPV--QREFQAAX--KEAF----PQxq--eYTEFQLE---GYLSARTVG-EALKH-P---------Knt----- 308 Verminephrobact...
WP_015875716 300 ---N---AR--AER-AAKE--TAAY----GGy----ADLHSMA---AYEILYMIK-TAIET-Q---------Gvlakpds 346 Burkholderia gl...
Q162M3       279 -DTR---PA--VNALRDAF--EAAT----GAg---pSSTYAYP---GYLLIDLWA-KAVER-A---------Gt------ 323 Roseobacter den...
Q0RLW8       309 tATT---DAtlYGAIARTY--NSKV----DPdp--aVSASQSA---GAITLLSFV-NLFKGfT---------Gd------ 358 Frankia alni AC...
Q2RNJ5       295 -DDA---PG--LA-LVREI-----A----GSet--pRTHHYIR---GVCSTFYMK-EAMEW-Aka------hGg------ 339 Rhodospirillum ...
WP_024078457 287 -ADT---TP--GMTLVREI--SKLSdp-sGKe---eRPSHYMR---GICSAFYMK-EAMDM-Att-----mpGg------ 338 Magnetospirillu...
WP_012693516 276 -EGD---RP--GIQLVKKI--GAQA----GRkidtiRSVHYTS---GMLAAAIAI-EAMKR-G---------Gk------ 323 Deinococcus des...
WP_015918307 290 -TDF---EI--HKRLKAEI--LDKG----KSdl-rdPKLFGAV---NYNIGLVNAaLAVEA-LrtgykhfgpKp------ 346 Rhizobium/Agrob...
WP_011831884 288 -LDS---KI--AKKVVDKL--HAKGegsgPKee--vGSALYMR---GLMNAMFAV-EGVRR-Aqqk---fgiGq------ 343 Methylibium pet...
WP_011993137 291 --GR---AR--VHDDLDKYvyGKGF----GKsn--hTDSSGVLfnrGMVGAMLGV-EGIRT-Amak---fgnKp------ 346 Xanthobacter au...
4M88_A       309 -gLSAANLA----------ATLSTXG-E-----IDIG-----GFHLDFSK-GNAGS--------RYVNIGVIGRDGQ 354 Verminephrobacter ...
WP_015875716 347 vqADRDKLR----------EGLAAIRtA-----DGLL-----GPVG-RTA-ERESV--------KPFVLVQAH-DSV 392 Burkholderia glumae
Q162M3       324 --VEASAVT----------AELEKMDnE-----PTAF-----GPRSFSDQlHHQNT--------AEMQIVEIT-NGK 369 Roseobacter denitr...
Q0RLW8       359 --PTSAAIT----------QQLRSAKnV-----PLFL-----GDGATYTC-DGKAVpilpnvcsSEVQIGTVKDDGT 412 Frankia alni ACN14a
Q2RNJ5       340 --LTGESIR----------NAMYARKdWvpkglEGVC-----IPSTWTPE-DHRGM--------TKVFIYQMQNGSE 390 Rhodospirillum rub...
WP_024078457 339 --VTGANIK----------AAMYKKSnWvpaglEGVC-----LPSTWKAD-DHRGT--------TQVMVYQAAikge 389 Magnetospirillum g...
WP_012693516 324 -dITAASVY----------KGLTSMNgS-----RAFNpgfsvGPVTFSAK-DHVGA--------ESLRLLEADATGN 375 Deinococcus deserti
WP_015918307 347 --LNGEQGRwafehltiddKRLEQIG-F-----KGLL-----QPIKITPT-DHEGG--------GAARIQSWD-GKK 400 Rhizobium/Agrobact...
WP_011831884 344 -vMTPAQARwgyenlqidqKRLEELG-I-----ADVM-----RPTATSCK-DHMGP--------SAARAYTWN-GTT 398 Methylibium petrol...
WP_011993137 347 --LTGEQVRwgiehlaldeNRLKELG-F-----EGMI-----SPIKISCS-DHEGS--------HTSRIQQWD-GKQ 400 Xanthobacter autot...
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