Conserved Protein Domain Family
Zn_ribbon_recom

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pfam13408: Zn_ribbon_recom (493360 is an unknown moldel)
Recombinase zinc beta ribbon domain
This short bacterial protein contains a zinc ribbon domain that is likely to be DNA-binding. This domain is found in site specific recombinase proteins. This family appears most closely related to pfam04606.
Statistics
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PSSM-Id: 493360
Aligned: 224 rows
Threshold Bit Score: 31.0405
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015565773 322 VLTGKIYCADCGAPMYN-----HR---QR---KGReriyytakgekrtshsnpaDC--Y-ECSTYNLGCQrydrH-CTCH 386 Faecalibacteriu...
Q5HMX5       313 aLTGLCKTP-DGKTMRV-----TQ---GK---KGTd-----------------dDL--Y-LFPKKNKHGD----S-SIYK 355 Staphylococcus ...
WP_012593974 252 SLAGLVICQKCQSSMTVisvkqRN---KK---QEY-------------------LY--L-RPKNCPLQP-----T-CQGR 297 Rippkaea orient...
WP_015955085 252 SLAGLVICEKCQSPMTI-----TR---VTprlKKS-------------------EYlyL-RPKNCSLNP-----P-CKSI 297 Gloeothece citr...
Q8YVA6       246 SLAGLVVCQQCQSHMTVtrvtqRH---QD---KEY-------------------LY--L-RPIKCPQSP-----K-CRAI 291 Nostoc sp. PCC ...
WP_012161503 261 SLSGIVFCATCQSPMTI-----SRvmpRG---KGK-------------------EYl-YlRPTKCPDKP-----R-CQA- 305 Acaryochloris m...
WP_014262132 314 PLTGLMYCSDCGSKMYV-----HR---TS---NYKn-----------------iPY--Y-TCSAYTKVPCg---TlCPSA 359 Filifactor alocis
WP_012103570 330 MLSGMMFCADCGAKLYQ-----VR---GKgwtHDK-------------------EY--F-VCATYRKKK-----GmCSSH 374 Clostridium klu...
WP_015758710 317 MFSGLVRCIDCGEVMTL-----HR---AHtiaAVK-------------------NN--F-MCSTYRKRGKe---K-CSSH 362 Desulfofarcimen...
WP_015565217 316 IFKGIVRCADCGRTMLVkv--eHR---RK----RNsvl--------------dqTF--Y-CCSTYRKYGAk---A-CDSH 365 Faecalibacteriu...
WP_015565773 387 -HISTKALKSIILKTIQ 402 Faecalibacterium prausnitzii
Q5HMX5       356 -GISYNVVYETLKEVIl 371 Staphylococcus epidermidis RP62A
WP_012593974 298 --SYQDILNKTI-ERIC 311 Rippkaea orientalis
WP_015955085 298 --LYEQVLEKTIESICR 312 Gloeothece citriformis
Q8YVA6       292 --AYQEILEQTIAKVCS 306 Nostoc sp. PCC 7120
WP_012161503 306 --ISYDKILQKTIQSIC 320 Acaryochloris marina
WP_014262132 360 hRIKAEVVLNLIQStlq 376 Filifactor alocis
WP_012103570 375 -QIRNVVVEQLLLEDLR 390 Clostridium kluyveri
WP_015758710 363 -YLREIHLAAIVLDDLL 378 Desulfofarcimen acetoxidans
WP_015565217 366 -NLEARVLHEAVLADIQ 381 Faecalibacterium prausnitzii
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