6DNW


Conserved Protein Domain Family
Zn_ribbon_recom

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pfam13408: Zn_ribbon_recom (This model is not part of the current CDD release)
Recombinase zinc beta ribbon domain
This short bacterial protein contains a zinc ribbon domain that is likely to be DNA-binding. This domain is found in site specific recombinase proteins. This family appears most closely related to pfam04606.
Statistics
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PSSM-Id: 520716
Aligned: 225 rows
Threshold Bit Score: 31.4265
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6DNW_A        134 LLNNLVVCSKCGLGFVH-----RRKdtvsrgkK---YHY--------RYYSCKTYKHTHEl-eK--CGNKIWRADKLEEL 194 Listeria innoc...
21_pfamImport   1 PLSGFMYCPDCGYKMKMnr-tmHTS-------K---KRGty----etVSYRCGTYVRSGMd--G--CTPHSILERVISQI 61 
9_pfamImport    1 IFTGLVYCADCGFKMRS-----HNE-------T---RKYsdghtqvfHSFICGNYSRSGK---Ta-CTIHMIYEDVLSKL 61 
10_pfamImport   1 LFSGKLVCADCKGPLGAstetqHRK-------NgtvKRY--------VSYCCERYIQSGR---Sv-CSWHRIYEMTLARI 61 
2_pfamImport    1 IFSGLLFCAGCRHKMYY-----QQG-------VniePRK--------FSYSCGAWRNRARtgsE--CTSHYIRKNVLLDL 58 
1_pfamImport    1 LFSGLLFCGDCGYKMYA-----VRG-------AgtlERK--------HAYTCGNYRNRARn--DmlCTTHYIRKSVLKEL 58 
WP_014262137  322 PFTGLLICSDCGGKLSYrepaeH---------Ke--KKYdc-----dYCFVCQHYRHRKG---T--CSMHYIKVKTVNEI 380 Filifactor alocis
WP_012103570  330 MLSGMMFCADCGAKLYQ-----VRG-------KgwtHDK--------EYFVCATYRKKK----Gm-CSSHQIRNVVVEQL 384 Clostridium kl...
WP_015758710  317 MFSGLVRCIDCGEVMTL-----HRA-------HtiaAVK--------NNFMCSTYRKRGKe--K--CSSHYLREIHLAAI 372 Desulfofarcime...
WP_015565217  316 IFKGIVRCADCGRTMLVkv--eHRR-------K----RNsvl---dqTFYCCSTYRKYGAk--A--CDSHNLEARVLHEA 375 Faecalibacteri...
6DNW_A        195 IIDRVN 200 Listeria innocua Clip11262
21_pfamImport  62 VVDDIR 67 
9_pfamImport   62 VLADIR 67 
10_pfamImport  62 VMAEIK 67 
2_pfamImport   59 VLEDMR 64 
1_pfamImport   59 VLADL- 63 
WP_014262137  381 LLKSIK 386 Filifactor alocis
WP_012103570  385 LLEDLR 390 Clostridium kluyveri
WP_015758710  373 VLDDLL 378 Desulfofarcimen acetoxidans
WP_015565217  376 VLADIQ 381 Faecalibacterium prausnitzii
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