1TM2,4PZ0,7X0G,3D02,5BRA,3GBV,6S3T,4KQC


Conserved Protein Domain Family
Peripla_BP_4

?
pfam13407: Peripla_BP_4 (This model is not part of the current CDD release)
Periplasmic binding protein domain
This domain is found in a variety of bacterial periplasmic binding proteins. This domain recognises fructose .
Statistics
?
PSSM-Id: 520715
Aligned: 167 rows
Threshold Bit Score: 58.0794
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1TM2_A          6 IA-----FIPKLVGVG-FFTsGGNGAQEAGKALGIDVTYDg---pTEPSV-SGQVQLVNNFVNQG-YDAII--VSAVSPD 72  Salmonella ent...
WP_004609335   33 FV-----FATPLKEHEvWLK-AKEGFDDACKEKKIHGDWIg---pIAIDT-QKMEEVIETAISQK-ADAII--TQ----G 95  Thomasclavelia...
26_pfamImport   1 FL-----FATPLAEHDiWLQ-AKEGFDDACEDFHVKGDWIg---pTVIDT-LEMEDVVYTGILQQ-ADGII--TQ----G 63 
WP_015814321   66 LAa----LIPDPNLDS-YWEaPHDGLEKAEKELRQYGVHIskfifNSHAE-PSFIAKAKEVTREH-PDGLL--IAPIFYK 136 Dyadobacter fe...
23_pfamImport   1 IVv----LIPSASPESaYWKaPLEGVRTAGSEIQRYSFTLdvllfDQNDR-HSFIPLAMQLLEED-FDALV--LAPMFHQ 72 
WP_008245329   69 IAa----LIPAVSNETgYWNaPLKGINEAASEIRNFGVSAdfyffDQNNK-KTFRDQCAVILDNG-YDGIL--LAPMFEE 140 Pedobacter sp....
EDS05232       38 VL-----VVLGGQNALdYDD-SEKAAKQWAEEKSISIEIVa----PEMSTvWEQQKVLEDSIRKNkWDLIV--VEPLGDD 105
Q3AFN0         28 VLpkvflVVAKTQQER---KnFIQTAYNLAREKKIALTVR-----GLNDDeKREEKVLKKIIAQK-PKGVI--WETAGSP 96  Carboxydotherm...
WP_007157432   37 VS-----VVVDHSNSDvWSS-FKMGLTAAGRAYNMEYNFVst--dRLVSI-QQENISMQREIQSG-ADGIIaeLRATEGT 106 Oribacterium s...
14_pfamImport   1 VS-----VIVNDSNNDrWIA-MREGLEQAAKDDDIQLNYVst--gVFASE-DEEKALIEREVENG-ADGII--VQLVSSE 68 
1TM2_A         73 GLC-PALKR-AMQRGVKILT--------WDSDt---KPECRSYYINQgTPKQLGSMLVEMAAHQVdKEK---AKVAFFy- 135 Salmonella ent...
WP_004609335   96 VINsWLINK-AKEKGIPIML--------VDSDv---EESERFAYLGK-NFNEQAKLFLNDIEKHL-GKDt-fLEIGIQv- 159 Thomasclavelia...
26_pfamImport  64 VISrDIVAY-ANQKQIPMVF--------VDSNm---ENSEHLYYMGK-DFKKQAQLLLADIEEKK-GKNe-pLKVAIQv- 127
WP_015814321  137 EAL-PFFKE-WEEMGIPYVL--------FNTQi---EHVNPLCYIGQ-DSYRSGSLAAKILRFGL-HSP---GTVLVAhv 198 Dyadobacter fe...
23_pfamImport  73 EAQ-PLLQH-CDENKIPYVF--------INSDi---PGSDSAAYFGP-DLFQSGCMSAQLINYIS-NPA---DEILLVhi 134
WP_008245329  141 EAM-DFLDN-CAKRDLPFVL--------INSDl---EHQPRVAYIGP-DLFQSGYLAGHLTKYLV-KEA---QQVLIVni 202 Pedobacter sp....
EDS05232      106 ELY-SVLDY-AKSQGSVVVAmqgaegleADYT-----------VQPC-DYQKLGSSMMDVFAGLV-GQSg--EYVTIVpa 168
Q3AFN0         97 RAG-YLAQKiYPKAKL-IFI--------NDVP----YDGLGDCAVLP-DFQKAAVMVAQNIALKD-KT----GKVLLLg- 155 Carboxydotherm...
WP_007157432  107 GLLlNALGKnAE-----IML--------VDSQkettEPGLNISSVNV-EEEALGKALAEQVLHST-LHRe-kKRIGILa- 169 Oribacterium s...
14_pfamImport  69 DTY-AVFEK--IDSSVAVML--------LETDa---VSEGVYSVTAP-DNLWIGEALAQTVLQDY-GDSlseKKIGILs- 131
1TM2_A        136 ---sSPTVTDQN---QWVKEAKAK-----IsQEh-pGWEIVT---TQFGYN-DATKSLQT-AEGIIKayPD--LDAI-IA 195 Salmonella ent...
WP_004609335  160 ---aEKNFDIAT---DQIKEIENV-----F-KThpgGYEIK----VVSESKsDSIRAKKE-WHNILS------TTKInVA 216 Thomasclavelia...
26_pfamImport 128 ---aNLDFQIAK---DQIAEVKEV-----F-EQhpgGYEIVN---VSES-KsEEIRAKKE-WEFVMS--QHadINVA-IN 187
WP_015814321  199 n-edISNSAHLI---TKEDGFRDYfkgekL-DD---TFKVIS---KEIN-FpDEEGPDKQ-LDELRQ--QYpdLGAV-YV 262 Dyadobacter fe...
23_pfamImport 135 s-reMEMQHHLL---RKEEGLLQYmqdngM------KQKLHK---LVIR-DtTYSAIEQA-LAEQLK--NTt-IQVL-FV 195
WP_008245329  203 s-reITFQHHLL---KKEEGFRAClaahdL------SIEVGK---VDIN-EtSYDAVQQR-LLELFD--LNk-PDLV-FV 263 Pedobacter sp....
EDS05232      169 kdsdIVMQEETAcvnQQKNTYLQMlpasrL-QE-----------------GaSIQDAYDI-TESLYG--TYg-MRGA-LF 225
Q3AFN0        156 ---sHRQTLSVF---TLEKALKNE-----L-RTlgkEVTVGKlpvVAGERAlDEIRNLAR-SQSIIA------LDGK--- 213 Carboxydotherm...
WP_007157432  170 ---gNQNKGNMQ---RRLHSLLSV-----L-EA---GGQEIAw---------VLPDRGKI-QEDMVKanHKrsVDLIvAL 224 Oribacterium s...
14_pfamImport 132 ---gNQNQLSMQ---QRLGSVKKL-----L-ED------------ENIEPVwILSGQGENlSSELVTkqADepVDIL-IT 186
1TM2_A        196 --PDANALPAAAQAAEN-L-K--RNNLA-IVGFSTPNVMR-PYVQRGTVKeFGLWDVVqqGKISVYVANALL 259 Salmonella enterica su...
WP_004609335  217 inFAGESAV-SCNEVANqLnV--RDSML-IYGVDDMPETI-ELIKDGQIDgSVVTSFYnyGYEATNWLYDYL 283 Thomasclavelia spirofo...
26_pfamImport 188 --FAAESAEFCWEAAMQ-QgI--RDDML-IYGVDDMPITL-DFIKEGKIDgSVVTSFYqyGYEGVRILYEYV 252
WP_015814321  263 --TNSKAFE-VAAYLEK-NaL--TDIK--LVGYDLIEHNQ-QYLNKGIIDfLINQNPLgqGYWGIHQLANHL 325 Dyadobacter fermentans
23_pfamImport 196 --TNSRVAS-VARFIEE-QqV--AGIC--LIGFDYLPDNI-AYLEKGIIDfLLCHKPVaqGYKSVMSLFQLL 258
WP_008245329  264 --TNSRVSS-VARFLQE-NaI--EGVQ--LIGYDFLEENI-AYLKNGTIDfLICQKPQeqGYRGLMSLYQHL 326 Pedobacter sp. BAL39
EDS05232      226 --FSYSNGLGISQWIQD-Tg----NDIV-SVGVGTPDLMN-TAIEAGTVDaLFYWNRDnlLKVTLEVGYRAL 288
Q3AFN0        214 ----------VGELLAE-EgM--KEQQGtVMASMVLTRKVaKAIKEGKILsSVDFMPEivANKALEAMDRVL 272 Carboxydothermus hydro...
WP_007157432  225 --ENDSLEM-ASRYLKD-TgRryVE----LYGVGNSREVV-YALDTGVIRcLAVIDQYtmAYYAMEDLWYKL 287 Oribacterium sinus
14_pfamImport 187 --LGNAETETAVDYLQAdTsY--KRQFM-IYGEGCSDKTV-YYLDKGIIKsLVVPNEFnmGYQSVHTIAEQI 252
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap