Conserved Protein Domain Family
RbpA

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pfam13397: RbpA 
RNA polymerase-binding protein
RbpA is a family bacterial RNA polymerase-binding proteins. RbpA acts as a transcription factor by binding to the sigma subunit of RNA polymerase.
Statistics
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PSSM-Id: 493350
Aligned: 47 rows
Threshold Bit Score: 108.83
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011691937    7 GFRGTRVGVAEGSapkiqpNDVVGERLPRIRVSYWCAKGHETRPVFIKLPedQIPVVWDCRRCGGTASRDESRVelPHHA 86  unclassified A...
WP_015748028    6 PIRGSRVGAGRMG------ESDRGESAPRQRFEFYCANGHATALAFAMDA--EIPDLWDCPRCGSPAGRDRAAPp-PATK 76  Nakamurella mu...
Q9Z522          6 AIRGSRVGAGPMG------EAERGESAPRLRISFWCSNGHETQPSFASDA--QVPETWDCPRCGFPAGQDRDNPp-DPPR 76  Streptomyces c...
7_pfamImport    1 AIRGSRVGAGPMG------EAERGEVAPRIQVSYYCAHGHVTRPSFASEA--AVPDDWECMKCGLPANRDPKNPp-PPPK 71 
WP_014846133    6 AIRGSRVGAGPMG------EAERGDAAPRLHVSYYCASGHETRPAFAADA--VIPESWDCPRCGLPANTDAENPp-PPPK 76  Arachnia
jgi:Psed_3415   8 AIRGTRVGAGPMG------ESERGETAPRVRVAYFCATGHETRPSFAADA--EIPETWDCPRCGLPAGRDHTSPp-AAPR 78 
12_pfamImport   1 AIRGSRVGAGPMG------EAERGDAAPRIWISYWCANGHETRPSFAEEAaeEAPVTWDCPRCGFPAGQDQENPp-SPSK 73 
WP_013838644    7 AIRGSRVGAGPMG------ESERGETAPRVRVSYWCANGHETQPTFCASEdvEAPDTWDCPRCGFPAGLDAANPp-APLR 79  Isoptericola v...
WP_013132234    6 AIRGSRVGAGPMG------EAERGEAAPRVRVSYWCANQHEVRPAFASDA--PIPEIWDCPRCGLPAGRDRSNPp-APPK 76  Thermobispora ...
WP_013018229    6 AIRGTRVGGRPAG------CPEHGEPVPRQFVDYWCVNGHHTRPSFSLRA--DIPETWECRRCGLPAGTDRESPp-EPPT 76  Stackebrandtia...
WP_011691937   87 DEGYKSHLEYVKERRSSQDAEDVLAGALERLR 118 unclassified Arthrobacter
WP_015748028   77 VEPYKSHLAYVKERRSDEDGEALLAEALARIe 108 Nakamurella multipartita
Q9Z522         77 TEPYKTHLAYVRERRSDADGEAILAEALAKLR 108 Streptomyces coelicolor
7_pfamImport   72 TQLYKTHLAYVKERRSDKEAQAILSEALAHLK 103
WP_014846133   77 ITPYKTHLAYVKERRTDAEAAQILEEAVSSLR 108 Arachnia
jgi:Psed_3415  79 NEPYKTHLAYVKERRSDADGAAILDEALSRLR 110
12_pfamImport  74 NEPYKTHLAYVKERRSDEDGAAILDEALAALR 105
WP_013838644   80 NEPYKTHLAYVKERRSDEDGAALLEEALETLR 111 Isoptericola variabilis
WP_013132234   77 NEPYKTHLAYVKERRSEEDGRQILAEALERLR 108 Thermobispora bispora
WP_013018229   77 SRPFKTHLAYVMERRSPEDGEALLAEALASLR 108 Stackebrandtia nassauensis
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