Conserved Protein Domain Family
HNH_3

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pfam13392: HNH_3 (This model is not part of the current CDD release)
HNH endonuclease
This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.
Statistics
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PSSM-Id: 493346
Aligned: 34 rows
Threshold Bit Score: 44.1393
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q84408       333 LKFHRKVVELFfGk-LP-KTveingkthhLIVDHIDDDKQNARL--DNLQLLTNQENSK 387 Paramecium bursaria Chlorella virus 1
Q8QNG0       274 KYVHVVVAEAFlGe-CP-AG---------YQVDHIDGNKSNNAV--SNLEYVSKRENDR 319 Ectocarpus siliculosus virus 1
Q6XQA1        50 YKRSRVIWEMFnGe-IP-DG---------FVIDHLNHNATDDRI--DNLECKPRRENMV 95  Escherichia virus T1
Q55C13        44 KFTHRTVGQRKvGreLY-AN---------EVVHHINKDTSDNRY--SNLVVLKKNIHEQ 90  Dictyostelium discoideum AX4
WP_012065080  97 RHAHRVVAEQKlGrkLK-KN---------EVVHHIDGNRRNNDP--DNLMVFSSSSDHM 143 Alkaliphilus metalliredigens
WP_004217538 146 VAVHRLLAVSEyGy-EEvGQ---------KVVHHKNGIPWDNRP--ANIEVLTAEEHGR 192 Natrialba magadii
WP_012055706  63 IRVHQVVATAFwGqnKE-EG---------MVVDHKDTNRCNNRA--ENLHWVTKLENVL 109 Phocaeicola vulgatus
YP_950500     61 SATHIIAYTHYhGy-IP-NK---------MQVDHLCNNRLCCNP--EHLELVTHQENQR 106
WP_012654388  53 VAVHLVMWTNEfGy-IP-GK---------KEIDHVCRNRLCVRPhpDHLELVTKKRNAL 100 Rhizobium/Agrobacterium group
ABS03245      41 RLAHRVAWYQAtGr-WPqSG---------LVLDHLCDVKACVNH--EHLVEVTNRHNVL 87 
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