4FE4


Conserved Protein Domain Family
Peripla_BP_3

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pfam13377: Peripla_BP_3 (This model is not part of the current CDD release)
Periplasmic binding protein-like domain
This domain is found in a variety of transcriptional regulatory proteins. It is related to bacterial periplasmic binding proteins, although this domain is unlikely to be found in the periplasm. This domain acts as a sensor binding small molecule ligands that the DNA-binding domain responds to. This domain recognises Sugars, sugar phosphates, sugar acids and purines .
Statistics
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PSSM-Id: 520699
Aligned: 58 rows
Threshold Bit Score: 68.5238
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4FE4_A        113 HLKEKGVNRFAFYGlpessGKRWATEREYAFRQLV-AEEKYR-GVVYQGLETAPENWQHAQNRL-------ADWLQT--L 181 Escherichia co...
WP_011743879  170 FLYEKGHRTIVFLR-----NNESDYNRHSGYVVIF-RESLLA-HAKELGMTVIESEHYEADSFDaqhfvstVFAHPD--R 240 Bifidobacteriu...
jgi:Amuc_0624 228 YLYQKGHRRIALCIpd--sKLRGNRLMEQGFLSFQgEHYTPY-VIRMPSDAIKAAQELNRIDLAdtg------------- 291
WP_012420706  206 HLWNKGHRTVGLCLpp--dPLKGHQLMQKGFFSFAeQGWNPI-LVPTPFETPLFFEYLAKAFKEhpd------------- 269 Akkermansia mu...
8_pfamImport    2 RLYEKGHREIAFLPmk--sRSATNQKIK--SKAEI-KYSGLK-VNITDTTSDIDI--EFLRDILeymm--------eeeL 65 
WP_015565757  175 AFADQGCRTAAVLTss--pVFEGMENRMHGFRLEG-EQHGLT-ILANRYCENSIRGGYEAVSh-------rLRHEWKqqL 243 Faecalibacteri...
jgi:Dtur_0853 179 AFIKRKHNYIIHLCgp--eRYTAARLRKLGFLDRVkIEEGIK-YEIIEGKMNYKSGYELGEKILdifnnerKSKI----- 250
Q8DY02        167 TLKKHGCQKMIMITgn-dnSDSPTGLRRLGFSYES-KESKVItVTNGLSNMRREMELKSIISTH---------------K 229 Streptococcus ...
WP_010076133  203 LGINLGHKSIHGIFk---kDDLQGIRREAGFFKAIeESENLE-NYRTVTYTTVTkhivp--------ldyvKTQIKNntH 270 Clostridium ce...
9_pfamImport    2 YLIHQGHTEIGFVGtv--gATTSITDRYLGYVRSM-LENNIT-PQDVWNIPDRSQEGEAIPLEL------------PkeM 65 
4FE4_A        182 PpqtGIIA--VTDARARHILQVCEHLHIPVPEKL-CVIG-IDnee-ltRYLSRvALSSVAQGARQMGYQAAKLLHRLLd- 255 Escherichia co...
WP_011743879  241 P---TAIInqANASVLSQVLMALHNAGMSIPQDV-SVLS-CGty--feGEPTRfPITEMPVMPEELCAEAMNLLVSAIee 313 Bifidobacteriu...
jgi:Amuc_0624 292 --itALIS--TRSRMLISIISWAATMAKSIPEEI-SLLS-LVhep-ylNHVTP-PITSYRSPAEKTTRRLIRMIEALL-- 361
WP_012420706  270 --msALVA--TRGNQIVPILSWVEARSLSIPDQL-SLVS-LTyep-fmERLLP-TITYYEENQTKTVHKLIRMLRSLT-- 339 Akkermansia mu...
8_pfamImport   66 Vt--AMIV--EDLRLLAKVQSILSTMGKQIGNDI-SVIC-VEhvknegAKMLP-KIDCYYVPALQLGETIATELLDNLt- 137
WP_015565757  244 Pd--AVFC--GSSAIAHGALRAFCEAGY-IGEKLpRLIAvGNgpeesdAFSIP-SLSVVYLPMEDMARECIQLVLGQLd- 316 Faecalibacteri...
jgi:Dtur_0853 251 ----GIFA--ANDWMAIGLIQRLKESGILVGKEL-SIIGcDDip--laKEVVP-NLTTFKWDVEKIISEIIELLDDIIn- 319
Q8DY02        230 Pd--GIFT--SDDLTALLVIKLISQLGLSIPEDI-KVIG-YDgts-fiQDYVP-HLTTIKQPIREIAQLMVEILLAKIe- 300 Streptococcus ...
WP_010076133  271 Pt--LFIC--YNDEIAVDVIRAINECGLKCPEDI-SVLS-FDdst-laYTSSP-NITSVVHPKEKLGKLVASNAISMV-- 340 Clostridium ce...
9_pfamImport   66 Pt--AFVC--NCDETAFQLVKELTAKGYHIPEDI-SVAG-FDnsi-yaQVCSP-PLTTVAVDIEEIGKLAARRMIKHMs- 136
4FE4_A        256 KEEMPLQRIL-VPPvrvIERRST 277 Escherichia coli K-12
WP_011743879  314 HTDIKGSVEL-IEPa-lKRRGSV 334 Bifidobacterium adolescentis
jgi:Amuc_0624 362 -EHRRISNSLiLPEl--CPGQSI 381
WP_012420706  340 -AGKNIKSISvIPEi--YPGQSV 359 Akkermansia muciniphila
8_pfamImport  138 GKKTKEISKR-FMPe-yIERGSV 158
WP_015565757  317 GRIATAESRL-LPIe-yVPRESC 337 Faecalibacterium prausnitzii
jgi:Dtur_0853 320 KKKIISNKRVlVSAk-lIIRETL 341
Q8DY02        301 -GQKTNKDYI-LPVs-lIPGSSV 320 Streptococcus agalactiae serogroup V
WP_010076133  341 EDNAKLENIIlTSDi--SIKKSC 361 Clostridium cellulovorans
9_pfamImport  137 NPAKKGGGVFrVPGn-iIYRESV 158
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