Conserved Protein Domain Family
PDDEXK_3

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pfam13366: PDDEXK_3 
PD-(D/E)XK nuclease superfamily
Members of this family belong to the PD-(D/E)XK nuclease superfamily
Statistics
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PSSM-Id: 493325
Aligned: 41 rows
Threshold Bit Score: 121.463
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8DL65          2 RDWLRIIQEIAEDIFQELGSGFSEAIYQKAFEVALRERQIEYEEQRKVPIFFHGYFVGE-AIPDLIIrdndQAVVVVELK 80  Synechococcus ...
jgi:Psta_1778   4 EEISSRVIGCAIEVHRHLGPGLLESAYQQCLAYELTSRGISFELQHPMPVRYKGILLDCgYRIDMLV----EKFLIVELK 79 
CAO80606       12 DELCSKIIGACIEVHKALGPGLLEKIYHQCLAREFALQGIQFQDEYAIGISYKGISLESeLRADFLI----ENTVILEIK 87 
WP_008198472    9 DDLTYRVVGAAIEVHKHIGPGLLESAYQKCLSIELKNRDIIFIEEFQIPLNYKGNMIETlFRCDFLI----EDIIVLELK 84  Algoriphagus m...
WP_012372901    7 PDESYAIVGAAFEVYNEKGCGFLEPIYHDCMELELGLRSIPFVHEPSLALSYKGMPLKHtYSPDFTC----WHKIVLELK 82  Opitutus terrae
WP_011833582    5 KDESYAIFGAIFEVYKTLGNTFIESFYQKALEHEFKLRKIPFVPQKRIPAVYKGQEIGY-YTPDFVC----FDKIIVELK 79  Methanocorpusc...
2_pfamImport    1 ADEVFLIQGAIFEVNRALGGGFLEAVYQECLGIEFEARGIPFVATPALRLAYKGRPLRQtYAPDFVC----FDKVLVELK 76 
Q72AH4         21 kDECYAIQGAIFEVYREMGCGFLEAVYQECLEKEFRSRELPFEAQKELLLSYKSQPLSQtYKPDFIC----YGNIIVELK 96  Desulfovibrio ...
ABN07772       19 PDEVHKIIGCAMTVYNILGRGFLEAVYHDALEVELELQGIPFEHKKHLNIFYKGVKLPSyYQADVVC----YDKIILELK 94 
Q7UN39          6 KQEGYDLMGAAFEVYNQLGYGMAEEIYQSALEVELGLRGISFVAQTELRVYFKGHLLTPkYRPDLLA----FGGIVVELK 81  Pirellula sp.
Q8DL65         81 AVQNIGDKEVKQVKKYMETLKIPVGVVINFPAataADRPqIIEV 124 Synechococcus elongatus
jgi:Psta_1778  80 SVDVIKGIHEAQLLTYMKLASIRVGLLINFNNt-tLKAG-IKRF 121
CAO80606       88 AVNLWNPIFEAQLITYLKLADIPIGLLVNFNVq-kLKEG-VKRR 129
WP_008198472   85 SVFEIMPIHQAQVINYMNLLKVPKGILINFNVvnlFHQG-QKTF 127 Algoriphagus machipongonensis
WP_012372901   83 ACEKLTDEHVAQVQNYLHATGYQLGLLVNFGAf--PKLE-YRRI 123 Opitutus terrae
WP_011833582   80 SRQNTTEEEQKQVMNYLNLGGYDLGILVNFGTy--PKVY-VQRI 120 Methanocorpusculum labreanum
2_pfamImport   77 AARAIAPEHRAQVLNYLRATGLRLGLLVNFSLh--SKAQ-VERL 117
Q72AH4         97 SVKEIASEHKAQLLNYLKATGLELGLLVNFGAy--PKVE-IVRi 137 Desulfovibrio vulgaris str. Hildenborough
ABN07772       95 TETELVKEDEAQLINYLKATGIKLGILINFGKr--RKLE-WQRV 135
Q7UN39         82 ALKELCPDHEAQLFNYMRIARKRVGYLINFGKk--GDLE-WKRF 122 Pirellula sp.
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