Conserved Protein Domain Family
Toprim_3

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pfam13362: Toprim_3 
Toprim domain
The toprim domain is found in a wide variety of enzymes involved in nucleic acid manipulation.
Statistics
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PSSM-Id: 493321
Aligned: 14 rows
Threshold Bit Score: 69.3529
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q63YQ8         222 RIFIVESAINALSIdtc---amPGAAALALRGL--ANVDAIDFS----SlRGKQV--VICLDnDEPFadghpraghrpGP 290  Burkholderia...
Q2YP81         198 kLIVCEGIETGLSLlsg--lvrGSVSVWAALST--SGMKTLTLP----G-NPGLL--TVATD-GDTA-----------GR 254  Brucella abo...
Q39YN7         260 SAIVVEGYFDHLALyqagvrnvVATCGTALTEGhiKLLK---------R-YAGNV--YTLFD-ADSA-----------GR 315  Geobacter me...
Q7P0C6         243 MVVIVESPINALSVecc---asSDVAALVLRGV--GNVDSIDWT----AlRGKRV--LVALDhSDPVnpat---glrpGL 308  Chromobacter...
Q5ZTT4        1780 RLYIAEGFETGASIal----adSKATVLCSFGV--SNMKNLSPIi--kKfHSKEV--VIAGD-NDGEfa--------kSQ 1840 Legionella p...
WP_013654490   233 pVLICEGWATGASLhi-----aTGHTVIAAMDA--GNLMPVAEAlrarF-PAADL--VLVAD-NDAKpdrd----dnpGV 297  Polymorphum ...
1_pfamImport     1 TIIITEGFATGLVIsr-----fVTATVVAAISA--TNLTQVAVAl--rE-RYPDAqiIIAAD-NDVTnsd-----nnpGK 64  
jgi:Acry_3226  487 ARVAGEGFETVASVvq-----eTRQAGVVGYNA--GGLV--AWAg--qFtGSTPV--ALLAD-RDNArlhngrdvgeaGQ 552 
WP_012565294   234 HLGVAEGIETALAAta-----iFGIPTWAGLSA--DGVRRFQWP----E-GTSQI--TIFADaGDA------------GR 287  Rhodospirill...
Q1GQ48         236 VMAAGEGIETLLSLre----lmPDMPMIAGLSA--AHLAAIHFP----Q-PLRRL--YVARD-NDAA-----------GS 290  Sphingopyxis...
Q63YQ8         291 EAAWALYERLASLNISAVLVDQagwladlADGetkqqpinDVNDYLQLRGPA 342  Burkholderia pseudomallei
Q2YP81         255 EAGEALAMRATAADWKVSLLPA-------PNGr-------DWNDILMMKGAa 292  Brucella abortus 2308
Q39YN7         316 KATLRAMDLCLDAGFPAHVVEL-------TAGe-------DPDSFIRKEGAE 353  Geobacter metallireducens GS-15
Q7P0C6         309 AAAWRLSEKLIAADIGHLLVDMqe----wDEGe-------DINDVLQRHGKD 349  Chromobacterium violaceum
Q5ZTT4        1841 QAIEKTINAFKQDNLSARAVFPdgl--qgKAKt-------DWNDIHLSKGIA 1883 Legionella pneumophila subsp. pneumophil...
WP_013654490   298 EAARKVALAVDG-----RLAVP-------ESPg-------DANDLFCAEGPD 330  Polymorphum gilvum
1_pfamImport    65 QQAEYAALAVNG----LVTLPP-------TCGk------aDWDDYRQQVGT- 98  
jgi:Acry_3226  553 KAAAKAAALIEANGGEAVYLEPpadvaggAKGa-------DWADALREGGAA 597 
WP_012565294   288 QAAAALADRLNRADILNSIVVP-------LHGd-------DFNDDLRQ-GKS 324  Rhodospirillum centenum
Q1GQ48         291 WAMKTLIERAEPLGIAIVPLDP-------RLD--------DLNSDLVRTGRE 327  Sphingopyxis alaskensis
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