Conserved Protein Domain Family
DDE_3

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pfam13358: DDE_3 (This model is not part of the current CDD release)
DDE superfamily endonuclease
This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.
Statistics
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PSSM-Id: 493317
Aligned: 25 rows
Threshold Bit Score: 95.8115
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8ZSE8         20 RTISIDEmTGIQATErLEKDLPMRPGKVERrEFEYIRHGTQSLIASFDVATGQIVePTCSDTRTEIDFALHIRRTIETDT 99  Nostoc sp. PCC...
ADD07678      179 TVVCIDQ-TKKSVQV-EPRAAWFPRGTRPS-VELSGQRDWTCLLGAITENGDRFF-TRFEEYVTAAHAKHFILALCQEFE 254
Q5V1W0         25 TVVVVDQ-FTKHVGT-VQRRGFYPIGSNPT-IEVATSWDSVTVLGAVTDNGDSFF-CWTEENLTRNHGIRLLEALKDRFG 100 Haloarcula mar...
jgi:Pnap_2901  30 PVVCMDE-TPRQLIReTREPIAAAPGRPERhDYEYERCGVCNVFMASEPLAGRRL-TKVTERRTKTDWAVFVQDIAASYP 107
WP_011811543  180 PVVCFDE-SPTQLIGeVRQPIPAEPGQPLRyDYEYKRNGTANLFVFLDAHRSWRR-VKVTERRMAQDFAQCMRDLVDIHY 257 Verminephrobac...
Q6LH76        165 PLLFMDA-VHPTQAT-KITAGWVKKGVDKP-IETTGSRTRLNIVGAIRLGHLSEAiVDKYKTVNGESIIAFLNRTRDFYR 241 Photobacterium...
Q5P1T1        182 EILFWDE-SGFRADA-VQGRTWGAKGRTPV-VAVPGQRQSISAASAVSMKGGFWF-AIYPGALNGELFVDLLRKLMHRRR 257 Aromatoleum ar...
Q12BS7        169 QIYWGDE-MGLRSDH-VSGKSYAPAGQTPL-IRATGQRFGCNMISAITNKGALAF-MVFEGKFRAPLFVEFLRRLLKQVE 244 Polaromonas sp...
WP_011733788  171 EIYWGDE-TGIQTGA-NVERGYSPKGKTPV-LRQTGRKHRINMISAITNQGKVRF-MFYKETMNSKRLITFMKRLVKDAG 246 Pelobacter pro...
WP_012592890  172 VIYWADE-TAVKEDT-NWIRGFAPAGRTPV-LEASARWAKLSMISAITNRGEIAF-QIVEGTINAERFIEFLERLIASAA 247 Thauera aminoa...
Q8ZSE8        100 Qa-kKWHLIMDCLNTHQSESLVRLVAEkeglnldlgikgesgilksmksrttflsdpaHRIVFHYTPKHSSWLNQIEIWF 178 Nostoc sp. PCC...
ADD07678      255 D---NLIVVLDGAPYFQASAVTDLAAR-------------------------------DDLTFVRLPAYSPELNPVEECW 300
Q5V1W0        101 E---ELVVFLDRAGYFYARDLWEHVSGeretetvgd--------------ssvscvrgDDLEVWYFPSKLPELNAVEGCW 163 Haloarcula mar...
jgi:Pnap_2901 108 Da-eRITLVMDNLNTHTPGSLYEAFSPeqak------------------------alwDRFEFVYTPKHGSWLNMAEIEI 162
WP_011811543  258 PqaeRIRLVLDNLSTHTAAALYQSMPPqear------------------------rilQRIEFHYTPKHASWLNMVEIEI 313 Verminephrobac...
Q6LH76        242 As-gTIHLVLDGAGYHRSFQVVEEAKK-------------------------------LNIELHYLPPYSPNLNPIERLW 289 Photobacterium...
Q5P1T1        258 K---PLHLVLDGLPAHKKAGVKTYVASt-----------------------------qGKLTLHFLPGYAPDLNPDELVW 305 Aromatoleum ar...
Q12BS7        245 G---KICLIVDGHPVHKSGVVKRFVQAn-----------------------------aQRLRLILLPGYCPELNPDELLN 292 Polaromonas sp...
WP_011733788  247 R---KVYLILDNLKVHHSHVVMDWLEKh-----------------------------kDKIEVFYLPSYSPELNPDEYLN 294 Pelobacter pro...
WP_012592890  248 S---KVFLIVDNLRVHHAKLVQAWVETr-----------------------------rAQIELFYLPPYAPESNPDEYLN 295 Thauera aminoa...
Q8ZSE8        179 SILVRKLLRrASFLSQDDLK 198 Nostoc sp. PCC 7120
ADD07678      301 RQLQAALSN-RFFDSLPELT 319
Q5V1W0        164 DQLQEWFKY-RLVPDISSLK 182 Haloarcula marismortui
jgi:Pnap_2901 163 NVMVDQCLS-RRIDSIETVR 181
WP_011811543  314 GVLRRQCLD-RRIDCRERLI 332 Verminephrobacter eiseniae
Q6LH76        290 KVMNKHARNsRYFATAKEFR 309 Photobacterium profundum
Q5P1T1        306 SHAKRTGNArRPLQKGETLQ 325 Aromatoleum aromaticum EbN1
Q12BS7        293 QDVKTNALGkSRPANKSEMI 312 Polaromonas sp. JS666
WP_011733788  295 NSLKGRVHSgERAQNVKQLE 314 Pelobacter propionicus
WP_012592890  296 HDFKTALRLePPSRDDSQLL 315 Thauera aminoaromatica
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