3RMP


Conserved Protein Domain Family
Arm-DNA-bind_3

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pfam13356: Arm-DNA-bind_3 (This model is not part of the current CDD release)
Arm DNA-binding domain
This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.
Statistics
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PSSM-Id: 520685
Aligned: 363 rows
Threshold Bit Score: 41.8681
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3RMP_A          3 LTDAKIRT-L--------------KpsDK-P--FkVSDS--HGLYLLVkPG-GSRHWY-----------LKYRiS-G--- 46  Yersinia pestis
Q6ALK6          8 FTKTRLVK-I--------------QntTGkDihF--FDTgmKGLMLRV-KAnGRKILR-----------ARIW-DtSk-- 55  Desulfotalea p...
Q6D9F1          7 FTKAKLSSlPaapkgkqv--eyhdshvK--------------GLRLRVga-tGVKTFCivkkv--qgkfFR--------- 58  Pectobacterium...
19_pfamImport   1 FTKAKLESlPpaergqi---eygdtlvN--------------GLRIRIgt-sGVKSFCisrkr--ngkfIR--------- 51 
EHR71395        7 FTIRSIEAlPapekgrs---eyrdartA--------------GLYLRVts-sGVRSFSfvgrakgsgrvER--------- 59 
Q129B4          7 FTKPRIEAlPpalpgkrd--eyrdealP--------------GLWLRVss-aGVKTYAvlark-kggalER--------- 59  Polaromonas sp...
WP_011912658    9 fSKERLLAlPppeagkra--tyhdtkiQ--------------GLQLRVsp-sGVKTFSlyrrm-kggqpER--------- 61  Stutzerimonas ...
WP_014087008    7 FTKAALTNlPvpaagqrf--tfhdikqP--------------GLQLRVta-nNVKTFAvfkrv-aggspER--------- 59  Pseudogulbenki...
WP_005374092    7 FTKPKIEAlRepkpgerlvyhdthKnaA--------------GLQLRhs--gNTKTFFiqkrv--dgkpER--------- 59  Methylomicrobi...
Q0A9S4          6 ITAKKLEA-L--------------QgkRRkSatR-EWDGdgSGFGVKV-SAaGRLTFF-----------QFYY-SpEgtt 56  Alkalilimnicol...
3RMP_A         47 ---------KEsRIAL--GAYPAI-SLSDARQQREGIRKMLAL-NIN 80  Yersinia pestis
Q6ALK6         56 --------kKEvQENL--GEFPEL-SINDARDIVVARVSDIAK-GID 90  Desulfotalea psychrophila
Q6D9F1         59 ---------------TviGRFP-ElSIEQARTFALEKLGSIGItGRN 89  Pectobacterium atrosepticum
19_pfamImport  52 ---------------AtlGRFP-DlSIDNARAKALEVLGEVATtGQN 82 
EHR71395       60 ---------------VtlGKFP-AvKPEEARRRATMLLGDLAa-GVS 89 
Q129B4         60 ---------------VtiGTAD-KlTPENARDKAKKIIADLAt-GVS 89  Polaromonas sp. JS666
WP_011912658   62 ---------------VtlGRFP-AmTVEQARKHASAVNAEIEa-GGN 91  Stutzerimonas stutzeri
WP_014087008   60 ---------------VsiGRFP-EvTVEQARSRAREVVNQLAt-GVS 89  Pseudogulbenkiania sp. NH8B
WP_005374092   60 ---------------VtiGKFP-DmSIENARKEAARLSALIAq-KIN 89  Methylomicrobium album
Q0A9S4         57 dkdgnditgKRrFMGL--GNYPET-TLAEAREKAQEARELLER-GID 99  Alkalilimnicola ehrlichii MLHE-1
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