Conserved Protein Domain Family
Fer4_12

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pfam13353: Fer4_12 (This model is not part of the current CDD release)
4Fe-4S single cluster domain
This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
Statistics
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PSSM-Id: 493313
Aligned: 51 rows
Threshold Bit Score: 95.7232
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012939145    12 ANGPG---VR---VSLY--VSGCTHHCKGCFNQETWDFA--------------------FGKPFT-QAQLQEILEDLE-P 61  Acidaminococcus
WP_012108211    11 IQGEGkfaGR---LAVFfrFAGCNLNCAG-FNCELKSPKtgeilrgcdtiravktahfdYEKISTvSQLLDKIGTNF--K 84  Campylobacter...
Q0RU46          23 ALGPG---VR---SAVW--VQGCPFDCAGCVAPDWIPDR--------------------PARAVT-PEVLAE--ELCA-D 70  Frankia alni ...
WP_015795514    22 ALGPG---LR---LGVW--GQGCPLACSGCMPRGTRDPD--------------------GGVEVG-AADLERRWRDTM-D 71  Catenulispora...
WP_012813484    84 LPGEG---VVkalCLHL--AHDCNMRCRYCFAGQGKFGG--------------------SSDLMP-LNVGKKAMEFLI-K 136 Desulfofarcim...
wustl:cce_2540  42 VNGPG---YR---AVLW--VQGCLRECPGCFNPDSWSFE--------------------MNQLIA-VNT---LVEKISsH 89 
4_pfamImport     1 VNGPG---SR---AVVW--VQGCPRECSGCFNPESWSFG--------------------INQLIS-VDTLAQNI--LS-K 48 
WP_013189852    31 VNGPG---CR---AVVW--VQGCPRECAGCFNPDSWTFE--------------------INQLVAiDSLGADILK----N 78  Trichormus az...
WP_012408326    31 VNGPG---CR---AVVW--VQGCLRECPGCFNTNSWSFE--------------------ANQLIAvDTLAENI---LS-N 78  Nostoc puncti...
WP_012104075    16 VNGPG---MR---RVFF--AQGCRHNCKGCFNPSTHCFN--------------------GGELKD----INVLIHDVKtN 63  Clostridium k...
WP_012939145    62 EYI----RGFSLLGGEPFEpaNQ--EVLVGVLRHIRERY---P-KKTIWCYSGYLFDHDMLagklgdpaITREMLGYLD- 130 Acidaminococcus
WP_012108211    85 NSL----PIIVITGGEPLL--NYanPLFYEFIDEILKRN---Fe--VHFETNGTIFVDFQKf----------PLYKNCV- 142 Campylobacter...
Q0RU46          71 PAV----EGLTFSGGEPMA--QA--AGLAELIRLARLRR---Pe-LSLVCFTGYRLQRLRAaap---spGVTDLLAAVD- 134 Frankia alni ...
WP_015795514    72 RGA----TGLTVSGGELLA--QA--GAFRRFLKSVRRVGsefGgDLDVLISTGYKLGEIDA--------DRVEAVDLAD- 134 Catenulispora...
WP_012813484   137 SSGsrrnIEVDFFGGEPLM--NF--KVLQDLVYYGEGLA---SaNGKIIKFTVTTNGLLLNk-------EVEDFLNCHDi 202 Desulfofarcim...
wustl:cce_2540  90 PRN----EGVTFSGGEPFW--QA--QALAELARKVKAKG---L---NVMSFTGFTLEQLQSeda---paGSQDLLAQLD- 151
4_pfamImport    49 PNN----TGVTFSGGEPFW--QA--TALASLARKLKAAG---L---NIMSFTGFTLKQLQSasa---ppDSAALLAELD- 110
WP_013189852    79 PHN----TGVTFSGGEPFW--QA--SALANLARKVKVAG---L---NVMAFTGFTLKQLQSesa---ppGSEELLEQLD- 140 Trichormus az...
WP_012408326    79 PRN----MGVTFSGGEPFW--QA--TALASLARKVKAAG---L---NIMSFSGFTLKQLQSqsa---ppGSQELLEQLD- 140 Nostoc puncti...
WP_012104075    64 PLV----KGVTFSGGDPFE--QA--EAFAYMARKIKELD---L---NIWCYTGYTFEYILDnkd---nqSWQELLRNID- 125 Clostridium k...
WP_012939145   131 --V-LVDGEFV-ESKKNLN-LR-FKGSENQRII 157 Acidaminococcus
WP_012108211   143 --F-AVSVKLG-NSKEPRE-KR-LNFTALQNLK 169 Campylobacter hominis
Q0RU46         135 --V-LIDGRYV-AALNDD--RG-LRGSSNQRIH 160 Frankia alni ACN14a
WP_015795514   135 --A-VIMGCYD-AASPTDP--L-WRGSANQSLL 160 Catenulispora acidiphila
WP_012813484   203 stVlSLDGRPDlHNYMRPM-PN-GEGSYKYVLP 233 Desulfofarcimen acetoxidans
wustl:cce_2540 152 --I-LIDGPYI-RSLAINSpDS-PVSSRNQRVH 179
4_pfamImport   111 --I-LIDGPFV-DSLAINSpTS-LVSSSNQGVN 138
WP_013189852   141 --I-LIDGPFV-ESQAINSpLS-PVSSRNQQVH 168 Trichormus azollae
WP_012408326   141 --I-LIDGPFV-QSLAINS-PNsPVSSSNQRVR 168 Nostoc punctiforme
WP_012104075   126 --V-LVDGKFE-EDKRDNR-LK-FKGSRNQRIV 152 Clostridium kluyveri
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