Conserved Protein Domain Family
Fer4_12

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pfam13353: Fer4_12 (This model is not part of the current CDD release)
4Fe-4S single cluster domain
This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
Statistics
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PSSM-Id: 520683
Aligned: 51 rows
Threshold Bit Score: 94.9541
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q328U8          12 VNGPG---TR---CTLF--VSGCVHECPGCYNKSTWRVN--------------------SGQPFT-KAMEDQIINDLN-D 61  Shigella dyse...
WP_012108211    11 IQGEGkfaGR---LAVFfrFAGCNLNCAG-FNCELKSPKtgeilrgcdtiravktahfdYEKISTvSQLLDKIGTNF--K 84  Campylobacter...
Q0RU46          23 ALGPG---VR---SAVW--VQGCPFDCAGCVAPDWIPDR--------------------PARAVT-PEVLAE--ELCA-D 70  Frankia alni ...
WP_015795514    22 ALGPG---LR---LGVW--GQGCPLACSGCMPRGTRDPD--------------------GGVEVG-AADLERRWRDTM-D 71  Catenulispora...
WP_012813484    84 LPGEG---VVkalCLHL--AHDCNMRCRYCFAGQGKFGG--------------------SSDLMP-LNVGKKAMEFLI-K 136 Desulfofarcim...
wustl:cce_2540  42 VNGPG---YR---AVLW--VQGCLRECPGCFNPDSWSFE--------------------MNQLIA-VNT---LVEKISsH 89 
WP_006195967    31 VNGPG---SR---AVVW--VQGCPRECSGCFNPESWSFG--------------------INQLIS-VDTLAQNI--LS-K 78  Nodularia spu...
WP_013189852    31 VNGPG---CR---AVVW--VQGCPRECAGCFNPDSWTFE--------------------INQLVAiDSLGADILK----N 78  Trichormus az...
WP_012408326    31 VNGPG---CR---AVVW--VQGCLRECPGCFNTNSWSFE--------------------ANQLIAvDTLAENI---LS-N 78  Nostoc puncti...
WP_012104075    16 VNGPG---MR---RVFF--AQGCRHNCKGCFNPSTHCFN--------------------GGELKD----INVLIHDVKtN 63  Clostridium k...
Q328U8          62 TRIk--rQGISLSGGDPLHpqNV--PDILKLVQRIRAEC---P-GKDIWVWTGYKLDELNA-----AQMQVVDLIN---V 125 Shigella dyse...
WP_012108211    85 NSL----PIIVITGGEPLL--NYanPLFYEFIDEILKRN---Fe--VHFETNGTIFVDFQKf-------PLYKNCV---F 143 Campylobacter...
Q0RU46          71 PAV----EGLTFSGGEPMA--QA--AGLAELIRLARLRR---Pe-LSLVCFTGYRLQRLRAaapspGVTDLLAAVD---V 135 Frankia alni ...
WP_015795514    72 RGA----TGLTVSGGELLA--QA--GAFRRFLKSVRRVGsefGgDLDVLISTGYKLGEIDA-----DRVEAVDLAD---A 135 Catenulispora...
WP_012813484   137 SSGsrrnIEVDFFGGEPLM--NF--KVLQDLVYYGEGLA---SaNGKIIKFTVTTNGLLLNk----EVEDFLNCHDistV 205 Desulfofarcim...
wustl:cce_2540  90 PRN----EGVTFSGGEPFW--QA--QALAELARKVKAKG---L---NVMSFTGFTLEQLQSedapaGSQDLLAQLD---I 152
WP_006195967    79 PNN----TGVTFSGGEPFW--QA--TALASLARKLKAAG---L---NIMSFTGFTLKQLQSasappDSAALLAELD---I 141 Nodularia spu...
WP_013189852    79 PHN----TGVTFSGGEPFW--QA--SALANLARKVKVAG---L---NVMAFTGFTLKQLQSesappGSEELLEQLD---I 141 Trichormus az...
WP_012408326    79 PRN----MGVTFSGGEPFW--QA--TALASLARKVKAAG---L---NIMSFSGFTLKQLQSqsappGSQELLEQLD---I 141 Nostoc puncti...
WP_012104075    64 PLV----KGVTFSGGDPFE--QA--EAFAYMARKIKELD---L---NIWCYTGYTFEYILDnkdnqSWQELLRNID---V 126 Clostridium k...
Q328U8         126 -LVDGKFV-QDLKDPS-LI-WRGSSNQVVH 151 Shigella dysenteriae Sd197
WP_012108211   144 -AVSVKLG-NSKEPRE-KR-LNFTALQNLK 169 Campylobacter hominis
Q0RU46         136 -LIDGRYV-AALNDD--RG-LRGSSNQRIH 160 Frankia alni ACN14a
WP_015795514   136 -VIMGCYD-AASPTDP--L-WRGSANQSLL 160 Catenulispora acidiphila
WP_012813484   206 lSLDGRPDlHNYMRPM-PN-GEGSYKYVLP 233 Desulfofarcimen acetoxidans
wustl:cce_2540 153 -LIDGPYI-RSLAINSpDS-PVSSRNQRVH 179
WP_006195967   142 -LIDGPFV-DSLAINSpTS-LVSSSNQGVN 168 Nodularia spumigena
WP_013189852   142 -LIDGPFV-ESQAINSpLS-PVSSRNQQVH 168 Trichormus azollae
WP_012408326   142 -LIDGPFV-QSLAINS-PNsPVSSSNQRVR 168 Nostoc punctiforme
WP_012104075   127 -LVDGKFE-EDKRDNR-LK-FKGSRNQRIV 152 Clostridium kluyveri
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