6URG,6V4X


Conserved Protein Domain Family
CPSF100_C

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pfam13299: CPSF100_C (This model is not part of the current CDD release)
Cleavage and polyadenylation factor 2 C-terminal
This family lies at the C-terminus of many fungal and plant cleavage and polyadenylation specificity factor subunit 2 proteins. The exact function of the domain is not known, but is likely to function as a binding domain for the protein within the overall CPSF complex.
Statistics
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PSSM-Id: 520653
Aligned: 87 rows
Threshold Bit Score: 96.9438
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6URG_F        608 VRLKDSLVSSL--QFCKAKD-AELAWIDGVLD-M---------------------------------------------- 637  human
Q5KIP3        724 LTLGDSISSALakKWSDFEG-YEVTFVDGKIVlPagstipiletpsl---------------------vgplvkteaegd 781  Cryptococcus ...
XP_009021832  606 VKLKDSVVSAL--KFSHVKD-VEITWLDAQLDmTkyqs----------------------------------------dt 642 
O17403        642 VALSDALLADI--QFKEVSEgNSLAWIDARVMeKeaidnmlavgtsnl--------------------middknreedvn 699  Caenorhabditi...
XP_004352034  605 SETHDSLIKSL--NTSKLMD-YEIAYIEAKVHiEdiilngat-------------------------------naatpla 650 
XP_007413464  489 VRLSDDLMSSI--KLSKVEG-FEVGYLTGILQvLdessiptlerlpi---------------------glnnstqltryn 544 
XP_053016502  806 VRLGDSIMNSL--RFSEVEG-FDVAYISGNLEiSnessiptlertng---------------------sreqpprkmrrm 861 
GAC76183      913 LTLGEGLLAQL--EMSRFEQ-FEVAHVRALVK-Aagdavagapvleteaslaedaeegseqaqarvlveladehvlrpvv 988 
XP_016290125  650 VQLGEALLSGL--QLSRFEE-FEVAHVRALVRrSatedevtvl------------------------------esesaia 696 
XP_012187581  838 VQLGEGLLAGL--ELSRFEE-FEVAHVRAMVKrMgedstqsvpvlev---------------------eedvsalasada 893 
6URG_F        638 -RvSKVDTGVILEEGELKDDGEDSEmqveapsdssviaQQKAm-------KSLFGDDEKETGEESEIIP-----TLEPLP 704  human
Q5KIP3        782 dAdDEAKPSAEELAAASAPPIS----------------------------------------------------SSAPLP 809  Cryptococcus ...
XP_009021832  643 tTtSINIKKEKRRDDSDNRDMDVDD-------------GSND----------PMDVDDDGRDVDDDVMP-----ALVPLA 694 
O17403        700 dQeENGATEGEGNAEPMEIGENGSQ-------------ESLAisesgkevENGHTNDSRTKKGTKGKIRgn--lILDPLP 764  Caenorhabditi...
XP_004352034  651 iTsPTTSTAITTTNDSKALTVVQPK-------------EKKI-------------------------IP-----LLDIMP 687 
XP_007413464  545 qRtSKPKDTENEESKLDISH------------------------------------------------------RLDALP 570 
XP_053016502  862 sAiKPVGEEGKEGDSSGGREGQ----------------------------------------------------RLEPLA 889 
GAC76183      989 hDtIEAEAEAEAEAEAETDGDAEPV-------------SNRA--------------------ALSLVQRgvhagRLDSAA 1035
XP_016290125  697 aAeDGEESGSKVLTDLTESGIVRS--------------------------------IESTVQASRVA------------V 732 
XP_012187581  894 dDdEKELAKRAIASSLSTNGIVRS--------------------------------LPSSIQASRLL------------P 929 
6URG_F        705 PHEVP-GHQSVFMNEPRLSDFKQVLLREGIQ-----AEFVG-GVLVCN-------------------------------- 745  human
Q5KIP3        810 LPTST------FIGDLRLARLKHRL---SLLnppipAEFAGeGVLVCGpgiaq--------------------------- 853  Cryptococcus ...
XP_009021832  695 PNLVE-KHSAIFINIPRLSDFKQYVISQGVQ-----AEMSG-GVLICN-------------------------------- 735 
O17403        765 KRLIP-IHQAVFVNDPKLSDFKNLLTDKGYK-----AEFLS-GTLLIN-------------------------------- 805  Caenorhabditi...
XP_004352034  688 VEESK-GHNVSFVGDVKLSEFKDVLTREGFQ-----VQFDK-GILSCN-------------------------------- 728 
XP_007413464  571 ITSST-----IFIGEIKLIGLKSYLNSIGIQ-----AEFTGeGVLICGpvsnkpsnnnsttnpiqkggekikyeilnqee 640 
XP_053016502  890 SIASG---SAIFIGDLRLAGLKAYLISNDIP-----AEFVAeGVLVCGpvplskclnelnnktkfipn--tpnvalnrpd 959 
GAC76183     1036 AASAAkLPGTLFIGDLKLSTLKSALAASPFRv---pAEFAGeGMLVCApas----------------------------- 1083
XP_016290125  733 PGAGD-VGGTLFIGDLKLSTLKSLLGHPPYRl---nADFAGeGMLVCApagak--------------------------- 781 
XP_012187581  930 TTTTPaIPGTLFIGDLKLSTLKALLGTSQYRl---pADFAGeGMLVCApsa----------------------------- 977 
6URG_F        746 ----------N-QVAVRRTET---GRIGLEGCLCQDFYRIRDLLYEQY 779  human
Q5KIP3        854 -----eaqgaAsVVSVRKIGE---GKIVLEGCIGRVYVEVRKALYGGL 893  Cryptococcus neoformans
XP_009021832  736 ----------N-KVAVKKNEL---GMILLEGTVCDDYYKVRQCLYEQF 769 
O17403        806 ----------GgNCSIRRNDT---GVFQMEGAFTKDYYKLRRLFYDQF 840  Caenorhabditis elegans
XP_004352034  729 ----------G-LVYLWREEVdgnSCINIDGVMSEEYYLVKELLYSQF 765 
XP_007413464  641 gieegskelmElKVLVKKNSK---GELSIEGPIGFNFFYIRDAIYSLH 685 
XP_053016502  960 lhtiatnelaGgSVSVRKSAK---GQLIIDGSLGLTFFAIRQAVYDLH 1004
GAC76183     1084 -------staAdAVTVQKHAK---GKIVIEGNVTRNFRTVRNAVYTLH 1121
XP_016290125  782 -----agtlgSeAVTVQKRGK---GRIVVEGNVGKSFGLVRGAVYGLH 821 
XP_012187581  978 -------vmgPeAVTVSKRGK---GRIVIEGNVTRNFGSVRRAVYGLH 1015
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