2LJ6,3TA7


Conserved Protein Domain Family
LigD_N

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pfam13298: LigD_N (493266 is an unknown moldel)
DNA polymerase Ligase (LigD)
This is the N terminal region of ATP dependant DNA ligase.
Statistics
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PSSM-Id: 493266
Aligned: 135 rows
Threshold Bit Score: 87.1673
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LJ6_A        40 QKHDASR--LHYDFRLELDGTLK-SWAVPKGPCLDPAVKRL---AVQVEDHPLDya-----------dfEGSIPQGHYGA 102 Pseudomonas aer...
CCE33272     107 HQHDHPIagTHYDLRLQINPTSSaSWAIMYGPPGNPNSSRLnrnATETRVHCLW---------------NHLVETASPHT 171
XP_006670597 132 HQHDHPIagTHYDLRLQINETSSvSWAIMYGLPGDPNSMRLnrnATETRIHSIW---------------NHLIETASPET 196
XP_013959544  79 HQHDHPVagPHYDLRLQINETSSvSWAIMYGLPGDANSSRLsrnATETPSTQ-----------------NHLVETASPET 141
XP_013938613  94 HQHDHPVagTHYDLRLQINETSSvSWAIMYGLPGDANSSRLnrnATETRIHSLWas-----------lpNHLVETASAET 162
EMT61408      92 HQHDHPIagTHYDLRLQINETSSaSWAIMYGPPGDPQSIRLnrnATETRIHCLWrlpqprlahfsfgirEHIASSPVKAS 171
XP_009648205 119 HQHDHPVagTHYDLRLQINGASSaSWAVMYGLPGDAGSARLgrnATETRVHCLW---------------NHLVETASRAT 183
XP_031890516 127 HQHDHPVagTHYDLRLQINETSSvSWAVMYGLPGDANSRRLnrnATETRVHCLW---------------NHVVETGGWHT 191
EQB51058     126 HQHDHPVagTHYDLRLQINETSSvSWAVMYGLPGDANSRRLnrnATETRVHCLW---------------NHVVETGSWHT 190
Q0V4Z9       100 HQHNHPRagVHYDLRLQFSKTSSmSFAVPKGLPGNPNSKSIgrmAIETRVHNYW---------------NHLIESASSKT 164 Parastagonospor...
2LJ6_A       103 GDVIVWDRGAWTP------------------------------L-D-----------------DPREGLEKGHLSFALDG 134 Pseudomonas aer...
CCE33272     172 GSMLIWDTGTYSVlpppslspsssrgkkyhgargypsseggsrSpSepesesdldkdgvsqqdLLARAFTNRKIRIRLHG 251
XP_006670597 197 GSLMIWDTGTYSIlprrskya-----------------paldpdsGasdgetaspsppttqqsLLHAAFQARKIKIRLHG 259
XP_013959544 142 GSLLIWDTGTYSIlprlskhera-----------pprgpssppAsHqspspsasasppqaaqsLLHAAFQDRKIRLRLHG 210
XP_013938613 163 GSLIIWDTGTYSVlprrskhap-------------pedpssppGsPhsssspnskqhtptaqsLLHAAFQNRKIRLRLHG 229
EMT61408     172 mpqr--------------------------------------------------------lirPLQRPHQNRKIRIRLHG 195
XP_009648205 184 GSLLVWDTGTYEVlgrrsksa-----------------pevdpesErsedeaea-edgrteqeKLRDAFAERKIRVRLHG 245
XP_031890516 192 GSLVVWDCGRYEVlekerpgp---------------gddpesgGeEeeeegegesgggmteqeKLARAFGRRKILVRLHG 256
EQB51058     191 GSLVVWDCGRYEVlergrpgp---------------gedpesgGeEqeeeesg---ggmteqeKLARAFGRRKILVRLHG 252
Q0V4Z9       165 GSLLIWDTGTYEVlprktggrnrkgmp---spqttddeeteldSdEetsrkptrttgiehendKLITAFQTRYIRLRLHG 241 Parastagonospor...
2LJ6_A       135 EKLSGRWH 142 Pseudomonas aeruginosa
CCE33272     252 HKLPRKYV 259
XP_006670597 260 TKLPDPYV 267
XP_013959544 211 AKLPDPYV 218
XP_013938613 230 TKLPNPYV 237
EMT61408     196 SRLPDPYV 203
XP_009648205 246 ARLPRGYT 253
XP_031890516 257 QRLPRGYV 264
EQB51058     253 QRLPRGYV 260
Q0V4Z9       242 TRLPKNYT 249 Parastagonospora nodorum SN15
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