2LJ6,3P4H


Conserved Protein Domain Family
LigD_N

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pfam13298: LigD_N (This model is not part of the current CDD release)
DNA polymerase Ligase (LigD)
This is the N terminal region of ATP dependant DNA ligase.
Statistics
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PSSM-Id: 520652
Aligned: 136 rows
Threshold Bit Score: 85.2421
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LJ6_A         40 QKHDASR--LHYDFRLELDGTLK-SWAVPKGPCLDPAVKRL---AVQVEDHPLDya-----------dfEGSIPQGHYGA 102 Pseudomonas ae...
CCE33272      107 HQHDHPIagTHYDLRLQINPTSSaSWAIMYGPPGNPNSSRLnrnATETRVHCLW---------------NHLVETASPHT 171
XP_006670597  132 HQHDHPIagTHYDLRLQINETSSvSWAIMYGLPGDPNSMRLnrnATETRIHSIW---------------NHLIETASPET 196
XP_013959544   79 HQHDHPVagPHYDLRLQINETSSvSWAIMYGLPGDANSSRLsrnATETPSTQ-----------------NHLVETASPET 141
XP_013938613   94 HQHDHPVagTHYDLRLQINETSSvSWAIMYGLPGDANSSRLnrnATETRIHSLWas-----------lpNHLVETASAET 162
EMT61408       92 HQHDHPIagTHYDLRLQINETSSaSWAIMYGPPGDPQSIRLnrnATETRIHCLWrlpqprlahfsfgirEHIASSPVKAS 171
13_pfamImport   1 HQHDHPVagTHYDLRLQINGASSaSWAVMYGLPGDAGSARLgrnATETRVHCLW---------------NHLVETASRAT 65 
XP_031890516  127 HQHDHPVagTHYDLRLQINETSSvSWAVMYGLPGDANSRRLnrnATETRVHCLW---------------NHVVETGGWHT 191
1_pfamImport    1 HQHDHPVagTHYDLRLQINETSSvSWAVMYGLPGDANSRRLnrnATETRVHCLW---------------NHVVETGSWHT 65 
XP_024325769  137 HQHDHPIagLHYDLRLQFSATSSlSWAIPFGVPGDPNSKRQlrlATETRVHTVG---------------SHLVEGASKGG 201
2LJ6_A        103 GDVIVWDRGAWTPl------------------------------------------------dDPREGLEKGHLSFALDG 134 Pseudomonas ae...
CCE33272      172 GSMLIWDTGTYSVlpppslspsssrgkkyhgargypsseggsrspsepesesdldkdgvsqqdLLARAFTNRKIRIRLHG 251
XP_006670597  197 GSLMIWDTGTYSIlprrskyapaldpdsga-----------------sdgetaspsppttqqsLLHAAFQARKIKIRLHG 259
XP_013959544  142 GSLLIWDTGTYSIlprlskherapprgpssppa-----------shqspspsasasppqaaqsLLHAAFQDRKIRLRLHG 210
XP_013938613  163 GSLIIWDTGTYSVlprrskhappedpssppgs-------------phsssspnskqhtptaqsLLHAAFQNRKIRLRLHG 229
EMT61408      172 mpqr--------------------------------------------------------lirPLQRPHQNRKIRIRLHG 195
13_pfamImport  66 GSLLVWDTGTYEVlgrrsksapevdpese------------------rsedeaeaedgrteqeKLRDAFAERKIRVRLHG 127
XP_031890516  192 GSLVVWDCGRYEVlekerpgpgddpesggee---------------eeeegegesgggmteqeKLARAFGRRKILVRLHG 256
1_pfamImport   66 GSLVVWDCGRYEVlergrpgpgedpesgg------------------eeqeeeesgggmteqeKLARAFGRRKILVRLHG 127
XP_024325769  202 GSMLVWDGGVYEVlprrkgdgperdpgsaegsqssgl---gdvekgekgeeeggekeevsensKLVEAFGRRKIRIRLHG 278
2LJ6_A        135 EKLSGRWH 142 Pseudomonas aeruginosa
CCE33272      252 HKLPRKYV 259
XP_006670597  260 TKLPDPYV 267
XP_013959544  211 AKLPDPYV 218
XP_013938613  230 TKLPNPYV 237
EMT61408      196 SRLPDPYV 203
13_pfamImport 128 ARLPRGYT 135
XP_031890516  257 QRLPRGYV 264
1_pfamImport  128 QRLPRGYV 135
XP_024325769  279 ARLPEGYT 286
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