Conserved Protein Domain Family
YmdB

?
pfam13277: YmdB (This model is not part of the current CDD release)
YmdB-like protein
This family of putative phosphoesterases contains the B. subtilis protein YmdB.
Statistics
?
PSSM-Id: 520642
Aligned: 261 rows
Threshold Bit Score: 242.702
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
BOB002_L21SP2:L21SP2_3305  16 LYIAEIVTKTGIYCVKNQLKSLIKEFQADFVIANGDGATGGFGLGKTHSIYLRKLGIDVITSGDQIFFKKDIQEHLPKAY 95 
WP_013970144                4 LYISEIVGKVGVFAVKKILPSLKKEKHIDFVIANADGTTGGYGLGRNHAGYLRKLGIDVLTTGDCCFYKKDLVQNFDRLP 83  Gr...
WP_015712292                4 LYIAEIVGKAGVYAYKKGLPELKSRFNPDFIIACADGATGGSGLGRNHAAYLHKLGANALTLGECCFFKKDLTENLAKIS 83  Le...
WP_015707467                4 LYIAELVGKTGVYALKKSLDDLKKQKPADFVIACADGATGGNGLGRNHAAYIHKLGVNVLTTGECCFYKKDLVENLGKIP 83  Tr...
O51427                      6 LITGEVVGKAGIIVIKSFLSSFKVEKKIDFVISGNNFTTGLRGLGKKHAFLLKKYGIDVLTLGENAFARPDLSDDLDKYN 85  Ly...
Q73MH3                      4 LYIAEITGKAGVWLVKTQLSNLKEKYKADFVIANANSATGSGGLGKQHAVYLKKLGIDCITSGDLIFQKKDLVDDLPKTP 83  Tr...
WP_020965636                4 LYVAEITGKAGVWVVKTMLKTLKEKFKPDFTIANANSATGSSGLGKQHAGYLKKLGIDCITISDSAFQKKDLVDSIENIS 83  Tr...
WP_013256577                6 LYIGEIVGKPGIHCIKKALPLLKEQHRIDFVIANGEGATGGFGIGKNHSIQIHKLGVNVITAGEKVYYKKDMVTHIPKSP 85  Se...
WP_013606467                6 LFLGEIVGRAGIKTVKDALRPLRQEREIDLVIANGEGATSGFGLGRAHSMQLLKLGIDVITGGEKMYYKLDMVEFITKNP 85  Sp...
WP_014269889                6 LFLGEIVGKPGIATVKSALRKLREDKKIDLVIANGEGATGGFGLGRAHSMQLFKLGIDILTGGEKIYYKKDMVEFIAKNP 85  Sp...
BOB002_L21SP2:L21SP2_3305  96 HLLRPANFPQGNPGRGWRTYTV-GgkkpdDkPersenIVVISLLGQSGFnRIhPSNPYTFLPNIVERAkkDADIVIMDFH 174
WP_013970144               84 YVLRPLNISPYAPGFGSRTYQV-Gte----------kVAIAVLLGQGGFdRLhAENPFIKLPELLERLrrETPYVIIEFH 152 Gr...
WP_015712292               84 YVLRPDNLNPEAPGIGSRVFKA-Gnl----------kVAVAVLLGQSSFrRIhSSSPFSGLPALLERLrlETPFTFIDFH 152 Le...
WP_015707467               84 YVLRPENLNSQAPGIGARIYNC-Gsf----------kIAVAVLLGQSGFtRLhGENPFSRLPALLERLrrETPYVLVDFH 152 Tr...
O51427                     86 FILKPLNCPAKLKGYSYFIYNI-N-----GkK-----LAVIRIVGQTGItKYkFNHPFYSFDFFYQRIkmQTNNIIVLFD 154 Ly...
Q73MH3                     84 HVLRPFNLPSESPGNGWKIFNLkPnk----------kIAVVSVIGRIGHhKImAENPFTETEKLVSRLkeEADIIFVDFS 153 Tr...
WP_020965636               84 YVLRPANLPSVSPGRGFKFFYNeKke----------kLAVVSVLGRIGHhKImSENPYIETEKLIEKLktETGFIFIDFS 153 Tr...
WP_013256577               86 YLIRAANFPYGNPGRGWRTYTA-Ggm----------kLAVVVLLGQSGFqRVhPANPHLMLPQLASKLreEHDAIIVDFH 154 Se...
WP_013606467               86 SILRPANYPQQNPGRGVRYLTV-Kdq----------kVCVINILGNADFpRThLSNAFSLAQILVDKAkeDQAISLVQFH 154 Sp...
WP_014269889               86 NILRPANYPQQNPGRGVKYLTV-Neq----------kVCVINLLGNADFpRThLGNSFALAQMLVDKAreDNQIVLIQYH 154 Sp...
BOB002_L21SP2:L21SP2_3305 175 SPITAEKATMNLYADGKLTAVIGSGSRTQTNDAQILPRGTAVISDAGRTGSIQSVGGFEPETEIRQKML-GVPARSNEHw 253
WP_013970144              153 ASTTAEKRSLFAQAEGLCSAVIGSHSRVQTADARITQGGTATITDAGRTGSINSVGGTDAKVRIQEYLT-GIPDWSRDTw 231 Gr...
WP_015712292              153 AQATAEKQTFFAMADGHCSAAIGSHCRVQTGDAKVLPGGTAVITDAGRTGSQNSVGGTEPDSRIQEYLT-GIPDWTKEAw 231 Le...
WP_015707467              153 AEATAEKRTLFALADGSCSAVIGSHNRVQTADEMVMPGGTAVITDAGRTGSQFSVGGADKEERIREYLT-GIPDWTKDGl 231 Tr...
O51427                    155 SNTTAEVNALFFYLKSRVSACLGTGKRILTADLRIL-DNTAIITDLGRVGSLDSVIGYSPDLEVDKFLKgFLNQKFNESw 233 Ly...
Q73MH3                    154 SFATAEKQALGFLLSGKVSALIGSGTRVQTADECILENKTAYITDAGRTGSLNSVGGYAIEDKIREYRT-CLPDFGKDAw 232 Tr...
WP_020965636              154 SFATAEKQAFGFMLDGKVSAVIGSGSKVQTADEKILQNGTAYITDTGRTGSLNSVGGYAAEDRIREYKT-CLPDFGKDTw 232 Tr...
WP_013256577              155 ACTTAEKANLFYRMDGEVAAILGSHTKALSADGRILQGGTAVISDTGRTGSLFGIGGLEPQTEIGKFLT-QIPERSKEYw 233 Se...
WP_013606467              155 ASPTAEKLSMGFMLDGKASAVIGTHTKVLSADAAILKGGTAYISDNGRCGSQLSVGGFDSKVEIEKYIT-QIPTRSQECw 233 Sp...
WP_014269889              155 ASTTAEKSTMGYMLDGKASAVIGTHTKILSGDARILKHHTAFITDNGRCGSQTSVGGFSSSTEINKFIT-QIPVRSNECw 233 Sp...
BOB002_L21SP2:L21SP2_3305 254 DGLeIQGVLLKVGDDGAAESIEPF 277
WP_013970144              232 DQIeLQALFIEIAPNGKATSISPL 255 Gracilinema caldarium
WP_015712292              232 AKPeLQGVLIDIGDDGKARSIERV 255 Leadbettera azotonutricia
WP_015707467              232 EKPeLQGVYLEINSQGKAISIERI 255 Treponema primitia
O51427                    234 EGLgFNGVLIDIDENGHSFSVEIV 257 Lyme disease spirochete
Q73MH3                    233 ARPvLQGLFIKTDDEGNAIEIKRI 256 Treponema denticola
WP_020965636              233 ERPvIQGVYLELDKTGRASKINRI 256 Treponema pedis
WP_013256577              234 EELeLQGAVVEINEKGTANEIYTV 257 Sediminispirochaeta smaragdinae
WP_013606467              234 DDLaLVGVLVDIADDGKATAIETI 257 Sphaerochaeta globosa
WP_014269889              234 DDLeLVGVLVDVENDGKATAIETV 257 Sphaerochaeta pleomorpha
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap