1UMP


Conserved Protein Domain Family
SQHop_cyclase_C

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pfam13243: SQHop_cyclase_C 
Squalene-hopene cyclase C-terminal domain
Squalene-hopene cyclase, EC:5.4.99.17, catalyzes the cyclisation of squalene into hopene in bacteria. This reaction is part of a cationic cyclisation cascade, which is homologous to a key step in cholesterol biosynthesis. This family is the C-terminal half of the molecule.
Statistics
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PSSM-Id: 493222
Aligned: 13 rows
Threshold Bit Score: 503.422
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1UMP_A        308 ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQIT-V-PGDWAVKRPNLKPGGFAFQFDNVYYPDVDDTAVVVWAL 385 Alicyclobacill...
WP_015246404  332 VSPVWDTAIAAIALADAKVPDYHPALLRAGRWLLEKEVR-V-AGDWQVRRPGVEPSGWHFQFHNERYPDIDDTAMVLLAL 409 Singulisphaera...
WP_012872483  294 TSPVWDTAWAVLALRRAGLPREHPRLALAVDWLLQEQIP-G-GGDWQVRTGTIPGGGWAFEFDNDHYPDIDDTAVVVLAL 371 Sphaerobacter ...
P33247        308 ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQIT-V-PGDWAVKRPNLKPGGFAFQFDNVYYPDVDDTAVVVWAL 385 Alicyclobacill...
WP_011699581  367 VSPVWDTALTVLSMLDAGVAAEHPGLEKAGRWLLENQVL-T-GGDWQIKNDSL-PGGWAFEFYNTRYPDVDDSAVVLSTL 443 Syntrophobacte...
Q74FC1        355 VSPVWDTALGLMAMVDSGVPTDHPSLSKAAQWLLDREVR-R-PGDWKIKCPDLEPGGWAFEFMNDWYPDVDDSGIVMMAI 432 Geobacter sulf...
WP_011937950  355 ISPIWDTALALKALVDSDVPTDHPALVKAAQWLLDKEVR-K-PGDWKIKCPELESGGWAFEFLNDWYPDVDDSGFVMMAL 432 Geotalea urani...
WP_012470285  358 ISPVWDTALVLQAMQEASVPLDHPSLIKASQWLLDREVR-I-KGDWKIKSPDLEPGGWAFEFQNDWYPDVDDSTAVMIAI 435 Trichlorobacte...
WP_011735113  355 VSPVWDTALALVALQEADVPADHPALVKAAQWLLNLEVR-R-KGDWQVKCPELEPGGWAFEFLNDWYPDVDDSGFVMLSI 432 Pelobacter pro...
WP_011522543  323 MSPVWDTAYALYALGEAGVPGSDPRMQKAAEWMLKKQVT-H-KGDWAVKVRNVQPGGWYFEFNNEFYPDVDDTAQVILSL 400 Candidatus Kor...
1_pfamImport    1 VSPVWDTCLALHALLEADGDVS-EAARRSMQWLLDRQIT-DaPGDWRERRPHLAGGGWAFQYANPYYPDLDDTAAVAWAL 78 
jgi:Rvan_3017 343 VSPVWDTGLAAHALLETGGEAEREAAQRGLEWLKPLQVLdV-KGDWADQKPDVRPGGWAFQYANPHYPDVDDTAVVALAL 421
WP_012563808  319 VSPVWDTALAAHSMLESGEAADIEAAKAGLDWLLPRQVL-DlKGDWADKRPDVRPGGWAFQYNNAHYPDLDDTAVVVMAM 397 Afipia carboxi...
1UMP_A        386 NTL-RL-P-DERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGY- 461 Alicyclobacill...
WP_015246404  410 QRT-AL-A-KTPEVKAATARGVNWLLSMQNRDGGWAAFDVDIDNEVLTKVPFADHNAMLDPSCADITARILECLGTLGY- 485 Singulisphaera...
WP_012872483  372 --L-EA-G-HEDRVRNAVERAARWILAMRSTDGGWGAFDRDNAREVIHRLPIADFGTLIDPPSEDVTAHVLEMLARLSF- 445 Sphaerobacter ...
P33247        386 NTL-RL-P-DERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFCDFGEVTDPPSEDVTAHVLECFGSFGY- 461 Alicyclobacill...
WP_011699581  444 NRF-NA-E-RVEGLEFAKCRGMEWCLSMQSSNGGWAAFDKDNTLEILNRIPFADQEAMVDYPTADVTGRVLEAMGYLGY- 519 Syntrophobacte...
Q74FC1        433 KNV-KV-K-DQRAKEDTITRGIAWCLGMQSKNGGWGAFDKDNTKHILNKIPFADLEALIDPPTADLTGRMLELMGTYGY- 508 Geobacter sulf...
WP_011937950  433 KDV-AV-K-DRKSMDGAIKRGINWCLGMQSKNGGWGAFDKDNTKYLLNKIPFADLEALIDPPTADLTGRMLELMGTFGY- 508 Geotalea urani...
WP_012470285  436 KDI-KV-K-NTKARQDAIRRGIDWCLGMQSENGGWAAFDKDNTKHMLNKIPFADLEALIDPPTADLTGRMLELMGNFGY- 511 Trichlorobacte...
WP_011735113  433 KNI-KV-R-DRKHREEAIKRGIAWCLGMQSENGGWGAFDRNNTKYLLNKIPFADLEALIDPPTADLTGRMLELMGNFDY- 508 Pelobacter pro...
WP_011522543  401 NHV-RT-S-NERYQDDTVKRALDWQLAMQCKNGGWASFDKDNNKMVFQYIPFADHNAMLDPATVDITGRVLEALSHHGY- 476 Candidatus Kor...
1_pfamImport   79 ARA-RR-P-ED---RPAVERAANWLAGMQSRNGGFGAYDVDNTYYYLNEIPFADHKALLDPPTADVSGRVLAFLAILDR- 151
jgi:Rvan_3017 422 DRAaHL-PgSHADSEQSVARAKEWVSGLQSKNGGWGAFDADNTCYYLNNIPFSDHGALLDPPTVDVSARCVSMLAQLGEk 500
WP_012563808  398 DRV-RRlD-GTTKYDEAIARATEWILGLQSENGGWAAFDADNLEYYLNNIPFADHGALLDPPTEDVTARCLSMLAQLGD- 474 Afipia carboxi...
1UMP_A        462 D-DAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVG-ID--TREPYIQKALDWVEQHQNPDGGWGEDC 537 Alicyclobacill...
WP_015246404  486 R-DDHPAVARALNYLWKTQEPQGCWYGRWGVNYIYGTWQVLQGLKALD-YP--MDHPALQKAADWLESVQQADGGWGESC 561 Singulisphaera...
WP_012872483  446 P-STDPVVARGLEFLQQTQRPDGAWFGRWGVNYIYGTWCAVSALTAFAdTDa-TARAMVPRAVAWLLDRQNADGGWGETC 523 Sphaerobacter ...
P33247        462 D-DAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVG-ID--TREPYIQKALDWVEQHQNPDGGWGEDC 537 Alicyclobacill...
WP_011699581  520 D-GSHPRARKAIQFLKKRQERDGCWWGRWGVNYIYGTWSVLKGLISIG-ED--PRAAYIRAAVRWVKDHQNSDGGWGETC 595 Syntrophobacte...
Q74FC1        509 P-KDHPAAVRALKFIRETQEPDGPWWGRWGVNYIYGTWSVMSGLAAFG-ED--MSQPWIRKAVDWLVEHQNEDGGWGECC 584 Geobacter sulf...
WP_011937950  509 S-KDYPAAVRALEFIKKNQEPEGSWWGRWGVNYIYGTWSVLGGLAAIG-ED--LNQPYIRKAVNWLKSRQNMDGGWGETC 584 Geotalea urani...
WP_012470285  512 T-KDHPQAVSALEFLKNEQEPEGPWFGRWGVNYIYGTWYVLIGLEAIG-ED--MNSPYIKKSVNWIKSRQNLDGGWGEVC 587 Trichlorobacte...
WP_011735113  509 P-KSHPAAERALAFLKKEQESEGPWWGRWGVNYLYGTWSVLCGLEAIG-ED--MNQPYIRKAVNWIKSRQNNDGGWGEVC 584 Pelobacter pro...
WP_011522543  477 S-LKDKVVQRAVKFIQSEQEPDGSWFGRWGVNYIYGTMLCLRGLAAVG-VD--HHEPMVQQAAEWLRMVQNPDGGWGESV 552 Candidatus Kor...
1_pfamImport  152 E-QDAPVRARLIQYLLREQEPSGAWFGRWGTNYIYGTWSVLMGMAELR-DPgaEVRDAMARAAHWLRSVQQDDGGWGESN 229
jgi:Rvan_3017 501 P-DTNATMKRGIDYILSEQEKDGSWFGRWGSNYIYGTWSALCALNAAG-VA--HESAAMRRAVAWLVSIQNEDGGWGEDG 576
WP_012563808  475 TlETSEPMRRGVEYLRKTQLPDGSWFGRWGINYVYGTWSVLCALNAVG-VP--HDDPMIAKAADWLESIQNEDGGWGEDG 551 Afipia carboxi...
1UMP_A        538 RSYE-DPAYAGK-GASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHV 615 Alicyclobacill...
WP_015246404  562 QSYD-DPSWMGR-GEPTASQTAWAVLGLVSAGRGRGEAASRGTAYLQATQREDGTWDEGPYTGTGFPRVFYLKYHLYRIY 639 Singulisphaera...
WP_012872483  524 GSYE-DPNLAGV-GRSTPSQTAWAVLALQAAGLGQHPACRRGLDFLRERQ-VGGTWEEREHTGTGFPGDFFINYHLYRHV 600 Sphaerobacter ...
P33247        538 RSYE-DPAYAGK-GASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHV 615 Alicyclobacill...
WP_011699581  596 ESYE-NPELRGQ-GPSTPSQTAWALMSLIACGEMKSQEASRGIQYLLRTQKRDGTWEELHFTGTGFPKHFYIRYHNYRNC 673 Syntrophobacte...
Q74FC1        585 ESYA-DPRLAGV-GPSTASQTGWALLTLLAAGEVASSSVVRGVQYLLDTQKPDGTWDEDAFTGTGFPKFFMIKYHIYRNC 662 Geobacter sulf...
WP_011937950  585 ESYH-DTSLAGI-GESTPSQTGWALLSLMSAGEANSSTVARGIQYLIANQKSDGTWDEEQYTGTGFPKFFMIKYHIYRNC 662 Geotalea urani...
WP_012470285  588 DSYW-DRTLMGC-GPSTASQTSWALMALMAAGEVGCQAVERGIQYLLATQNSDGTWDEEAFTGTGFPKYFMIKYHIYRNC 665 Trichlorobacte...
WP_011735113  585 ESYF-DRSLMGS-GPSTASQTGWALLALMAAGEANSRAAAQGVKYLLETQNEDGTWDEDAFTGTGFPKFFMIKYHIYRNC 662 Pelobacter pro...
WP_011522543  553 GSYD-DPKLRGQ-GPSTASQTAWAVMGLLAANDLRSDSVTRGIAWLLENQKPNGSWWEKWITGTGFPRVFYLKYTMYAEY 630 Candidatus Kor...
1_pfamImport  230 DSYA-DPGLAGLgQESTAAQTAWACLALMAAGDSDSESLRRGIQWLQRHQEQPGDWQDPYFNAPGFPRVFYLTYHGYKIY 308
jgi:Rvan_3017 577 SSYKlDYKGYEK-SPSTASQTSWALLGLMAAGEVDNPAVKRGIAWLVANQNEAGTWKEERHNAPGFPRVFYLIYHGYSKY 655
WP_012563808  552 NSYKlNYKGYER-AATTASQTAWATLALMAAGRVDRDATQRGIDNLVQSQEADGFWGEPYYTGGGFPRVFYLRYHGYSKF 630 Afipia carboxi...
1UMP_A        616 FPTLALGRYKQ 626 Alicyclobacillus acidocaldarius
WP_015246404  640 FPLMAMSRYQA 650 Singulisphaera acidiphila
WP_012872483  601 FPTMALAGAAT 611 Sphaerobacter thermophilus
P33247        616 FPTLALGRYKQ 626 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
WP_011699581  674 FPLMALGQYLR 684 Syntrophobacter fumaroxidans
Q74FC1        663 FPLMALGRYRT 673 Geobacter sulfurreducens
WP_011937950  663 FPLTALGTYRK 673 Geotalea uraniireducens
WP_012470285  666 FPLTALGRYRR 676 Trichlorobacter lovleyi
WP_011735113  663 FPLTALGRYRR 673 Pelobacter propionicus
WP_011522543  631 FPLIAFAEYLR 641 Candidatus Korobacter versatilis
1_pfamImport  309 FPLWALARYRN 319
jgi:Rvan_3017 656 FPLWALARYRN 666
WP_012563808  631 FPLWAMARYRN 641 Afipia carboxidovorans
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