6YFV,9G8M,6BB8


Conserved Protein Domain Family
MTR4_beta-barrel

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pfam13234: MTR4_beta-barrel (This model is not part of the current CDD release)
Mtr4-like, beta-barrel domain
Exosome RNA helicase Mtr4 is a essential RNA helicase, and is an exosome-activating cofactor. It functions together with the nuclear exosome being involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclear RNA surveillance pathways involving the so-called TRAMP complex. It contains an arch domain, required for proper 5.8S rRNA processing, and appears to function independently of canonical helicase activity. The arch domain comprises an helical stalk/elbow that flanks a KOW module which adopts a beta-barrel fold. This entry represents the beta-barrel of MTR4 and related Ski2-like helicases. Ski2 from yeast has an overall similar structure to MTR4 proteins. However, it does not have the KOW motif and it is not included in this entry.
Statistics
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PSSM-Id: 520624
Aligned: 237 rows
Threshold Bit Score: 47.3563
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6YFV_C          1 MDEALIK-DyHSIREQIDQy----TKdmvlvMQHPTNCVK----YiNPGRlmhvvtsdgtdfgwGVIINFYERRPernnP 71   Thermochaetoi...
XP_006691628  886 VNPLGRKmF-SPGRLIVWMke-gvRT-----PGILLAEGAsvksS-AQS---------------PTLHVLEIRTNreqrN 942 
XP_003651257  887 VNPLGRKmF-SPGRLIVWMke-gvRT-----PGILLAEGAsvksS-ATN---------------PTLHVLEIKTGrelrN 943 
XP_003666375  899 VNPIGRKmF-ATGRLIVWMke-gvRT-----PGILLSEGAsvksS-ATN---------------PTLHVLEIRTNremrN 955 
Q2H3S0        886 VNPLGRKmF-TPGRLIVWMke-gvRT-----PGILLSEGAivksS-AAN---------------PMFQILEIRTNreirN 942  Chaetomium gl...
EPS36528      768 KNPQGKRmF-CSGRVVIIQddkgtRT-----VGVLIRPTL----T-PGSN--------------PFMQVLRLTGGndqkI 822 
O59801        815 TTANGKRiF-KDGRVIVFQqldftRT-----VGVLLGTSIr---T-NASD--------------CTLEVAYLNPQnnlkR 870  Schizosacchar...
XP_002175239  810 RTPNGRRlF-KEGRVVVFQhanatRS-----VAVLLGSALt---T-SSDD--------------CSLEAAFLSPIddqkR 865 
XP_011118827  847 KNPQGKRmY-CSGRVIILQdkdstRT-----IGVLIRPSQ----T-TGAD--------------PVIQILKLTGGndqkI 901  Orbilia oligo...
XP_965488     893 AIPVGRKlF-TPGRLIVYMke-gvRT-----PGILLAEGPskagT-AAN---------------PTLHVLEIKTGrdlrN 949  Neurospora cr...
6YFV_C         72 NpgWSPqeSYVVEvl----lRLs---SDSG-SVDSKLKDNQCIPAGIAPVTQKNdpgrwevvpcLLSCMHGLSQIKLHvp 143  Thermochaetoi...
XP_006691628  943 D--TDL--LPFVPafrkhftPLpqnkRHIStKTLHVPISDLVCLTKTVTKGVLPdi-------fgGDGYQKAKERLHNic 1011
XP_003651257  944 D--SDL--LPFVPafrkhltPLpqnkKHIAtKTLHVPISDIVCLTKHVTKGILPdi-------fgGEGYPKAKDRIHQic 1012
XP_003666375  956 D--TDL--LPFVPafrkhltPLpqakKHIStKTLHVPISDLVCLTKHVTKGVVPdif------ggGEGYAKAKEKLHMic 1025
Q2H3S0        943 D--TDL--LPFVPafrkhftPLpqakKQILtKTLQLSITDLVCLTKHVVKGIVPdi-------fgGEGYMRAKEKLHQvc 1011 Chaetomium gl...
EPS36528      823 P--SDS--IPFAQvfatvirNIa--aDKSKiKESAVPLTQIEYISRTIVETRISear-----tgKGTVVKQLAQELKElg 891 
O59801        871 P--SDL--LAFADafndvydNAif-dESNQfKYGLINLSGIERVCNTILRIDSGgir-----drRGGAFRKLSEQFASik 940  Schizosacchar...
XP_002175239  866 P--SDL--LPFTSclqpfidATvl-qDWSRfRYGYITLSTIERVCDTLVKVDCNgvr-----drRENAFKKLAAQFASvh 935 
XP_011118827  902 P--GDA--VPFNPlfapvirQVa--gDKVKiKETAVPLSQIEYISKTVVDARITear-----tgKAAVVKQLLQELKElg 970  Orbilia oligo...
XP_965488     950 D--TDL--LPFTPtlakwftPLpahkKNIYtKTVHIPLSDVVCLTKHITKSIVPelf------dgGDGYTKAKEALHQic 1019 Neurospora cr...
6YFV_C        144 dkksggsmdDPETR---RRVGKSLLEVQRRFEDGIPHMDpiE-NmH---IRDVEFKKLLRKIEVLESRLVANPLHNS 213  Thermochaetoides...
XP_006691628 1012 rtw--nsdiWDEIDlgrIRSLQIHEILQKRREAEIKVTK--SpA-AtdcRLFLKHYAMCHDQWVIKTHIAELRKQLS 1083
XP_003651257 1013 rsw--nsdiWDEADlgrIRNLAIHEIVTKRREAELKAVK--SpA-Ae-cKSFLKHYAMCHDQWLIQTHIQQLRQTLS 1083
XP_003666375 1026 rsw--nsdiWDEMDlgrVKNLAVHEIAAKRREAEIKVAK--SpA-Ae-cKSFLKHYAMCHDQWLIQTHIQQLRQTLS 1096
Q2H3S0       1012 rtw--ntdiWDEMDlsrIRNLAVHDIASKRREAEVKVTK--SpA-Sg-cQTFLKHYAMCHDQWLIQTHIKQLRETLS 1082 Chaetomium globo...
EPS36528      892 qnw--edsrWTENDwakIRDMQFQEIFKARKVELQKIRK--YkS-Lv-cPNFSKHFRARNEEYKLQEEINNLKQLIS 962 
O59801        941 kf---sdllFEEVNwskVRDFEFCEAFEKRNFLQNKLSG--NpI-Is-tPNFLTHFALAYQEYELESNIDNLSSYIS 1010 Schizosaccharomy...
XP_002175239  936 df---gnsiFDEIVwtkVKEFSFKEAEEKRHHEEMVIAT--SpC-Le-eVNFTTQFALCYQEHQLNVTIENLRLQIS 1005
XP_011118827  971 qgl--ddsaWTENDwtkIRDMRFQEVMKGRKAELQKIKK--CkS-Ls-cPKFAKHFRARNEEYKLQEKIKNLKQLIS 1041 Orbilia oligospo...
XP_965488    1020 ksw--sapiWDEMDlsrIKSLSIHEIITRRRDAEIKCTK--SsA-Vd-cDLFLKHYAMCHDQWLIKTKIDELRQSLS 1090 Neurospora crass...
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