1RU4


Conserved Protein Domain Family
Beta_helix

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pfam13229: Beta_helix (This model is not part of the current CDD release)
Right handed beta helix region
This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Statistics
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PSSM-Id: 520622
Aligned: 89 rows
Threshold Bit Score: 35.8396
Created: 16-Feb-2025
Updated: 25-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1RU4_A          108 YGFYVTGDYW---YFKGVEVTRa-GYQGAYVIGSHN-TFENTAFHH------NRNTGLEINNGg-----SYNTVINSDAY 171  Dickeya chr...
Q5WHY7          106 WGIHVLEDGHl--DLTDATIRH--SGIGLFVVGRAR--AEYCALYS------QRGSQVCVSGN------GRFVMKHSHIY 167  Bacillus cl...
XP_001417305    255 EAIRIKGDSRvnaLIENCVIRSs-GGDCVAVGGKSApTFRNCSITG-------KLSGVRSYAQ------ATPTFIDCNIT 320 
XP_003059328    432 QAIHVEGGDAvdaLIENCRIKAs-GDDGICVDGSARpTFRNCDVTG-------KKSALRTMGN------ARAELVDCKLH 497 
XP_001306000    308 SCVLVKKDSEv--SIFDSHIYDaeKANLVEATDGGIlKVKNCTLNGectnsiSSSIGASVLCEnlelrrNVSSTSGGFIE 385 
jgi:Strop_0467  119 PAISVADRSEf--TLTRCRVNGa--RYGLVVEDSDG-TVEGCEFSD------LSEDGIIIRIG------AAPTIRTSTIT 181 
XP_001581264    182 RGLNLRSATTa--FVSRSTFLGm-TTHGVSATQKSQyVIEESSFSS------CRAAAIESKTDg-----KLLQVDACRIE 247 
EAX90091        339 NGLIVKARAAt--TIKDSNFQDi-RKDAVHLIDNCSaVFKSVKVNN------VGAHGFLISSEs-----KRISLIDCEIT 404 
Q4E3J7          767 FGVVVNGPSAs-vTMSNVTIEDs-GVAGVFVQRGGVcRFEQCVIKR------SKEDGIRMEQA------GAVVFEQCSIL 832  Trypanosoma...
XP_001581636    257 DGILLSGASVa--KFNNCSILNg-GKNGISSNNSSRfIIDGCKIQS------CALHGINITAAc-----LCSIIIQTSIT 322 
1RU4_A          172 RNYdpkkngsmadgfGPKQKQGPGNRFVGCRAWENsd-dGFdlfD---SPQkVVIENSWAFRNginywndsafagN---G 244  Dickeya chr...
Q5WHY7          168 QGKs----------aAIYFDQNSRSFVENCQIYGHhs-eNMqlkSm-gNSE-VALKDCLIYEG------------S---S 219  Bacillus cl...
XP_001417305    321 RSGl----------qGVLAMKESRVIMHGCAVQNNee-dGVvvmE---QSN-VVMSKCVVQDN------------K---G 370 
XP_003059328    498 CCEt----------sGVKTFGESRATLRDCHIENCqh-eGVvamQ---RST-VHMENCVVVDN------------K---G 547 
XP_001306000    386 LRQcq---------lTTAVIENARFTAIGCDIFSTes-cGLatvG---QCD-IVLDQTVIHNC------------R---S 436 
jgi:Strop_0467  182 RCGn----------rGIYVYQYGRPTIEACDISQTgh-aGV---AvvhQCA-PVLRRCRIRDT------------R---G 231 
XP_001581264    248 NCD------------SGILVFNGSVTVSNSKIGSMsn-ySLlvqG---SAQ-VTTNGNEFNDN------------S---G 295 
EAX90091        405 DCRe----------tGISAFLASSLTLHRNTIKKCk--tCLevsD---GSS-ILMKSNRFMDT------------Y---S 453 
Q4E3J7          833 EQHqgvk----ttgtLGTARADGEPKLINCTIDGSfcekGVls---tkKSI-VRLELCKISAR------------SpekG 892  Trypanosoma...
XP_001581636    323 ECGq----------sCISASLLSTPKIIGCKLADCyg-pAVilnD---GVG-CTMRNNSIEHC------------G---G 372 
1RU4_A          245 NGFKLGGNQavgNHRITRSVAFGNVSKGFDQNNNAGg---VTVINNT 288  Dickeya chrysanthemi
Q5WHY7          220 GGALVLGES---KLTLNSCTLTNNVPKQVVVLGGET------IIQNS 257  Bacillus clausii KSM-K16
XP_001417305    371 PGVDVSNTA---KVVVNDCDIDANV-GGLWLWDHSC----AHVAASS 409 
XP_003059328    548 PGVDASDDA---RVVLVDVVVDDNV-GGVWLWDHAS----CDVRGGV 586 
XP_001306000    437 NGAEFSELS---AVTATNCKFLANSGGGVSVSSTSAmfshCLFAGNA 480 
jgi:Strop_0467  232 PAVSFARGCq-gTV--EECTTENTALPAI-EVAADAt---PTIVESV 271 
XP_001581264    296 EGAVIACEGg--RLIANKDKFTGIMKCGIAAFSKSS----IKVSDAT 336 
EAX90091        454 DAMVICFCHa--NVLSQEDTFSGIG-NGLCAMERSR----VTVQGGK 493 
Q4E3J7          893 RGVVVQDGG---TVLLSQCDVFGCPRVGV-IASAMSq---LMVENST 932  Trypanosoma cruzi
XP_001581636    373 IASVIIQCNa--SLHSSGDKYS---KTGPIAILAAEn---SKIELNQ 411 
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