Conserved Protein Domain Family
DNA_pol3_delta2

?
pfam13177: DNA_pol3_delta2 
DNA polymerase III, delta subunit
DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Statistics
?
PSSM-Id: 493170
Aligned: 33 rows
Threshold Bit Score: 153.157
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_012507505   8 GQKQQIRVLQNALETGRFAHAYLFTGPDGSGKESVAFEIASLLNCQNAATDVhk---gSCGTCPDCLQIQSFMHPNVEYI 84  Pelodictyon pha...
WP_012904163   9 IPADKLQQLRTDAAADRPTHAWLFTGATGAPHREAAKIFAAALLCEQPDPQNr-----GCGQCKGCVTVMNGSHADFTHF 83  Rothia mucilagi...
3_pfamImport   1 GHGAAEQFLASSYQSGKLHHAILIEGPEGIGKATLAFRFAHHVLSHPDPASApfviadPDPNSLVGRQIASGASHNLLHI 80 
Q2SIR6        14 WLSKTWRDWVGLAHNDKVPSAILVAGQSGVGKNRLTSEYAKFLLCEQAKRLEr-----PCGDCRSCKLIEAGTHPDLQWV 88  Hahella chejuen...
WP_003774201   6 nQTKALNLFHRQQSKNRVSHAYLIVGDY--GTLDYAKYMAMSMMCGEQDIG-------ACGSCSTCQRIDSENHADFRIL 76  Erysipelothrix ...
2_pfamImport   1 -QPIFYNLIKNEFSQQRIPHAFLLIGNNTNIPL---TYLAMSLICDETL---------ACENCNDCRKVKENKYSDIIRF 67 
4_pfamImport   1 INENLSKVLENSIKNNKLQQVYLLFSRANQDIDLDILEFVRLVNDEKQISWHq------------------CLQKEYCFI 62 
Q6F0E2         2 KKREALEKFVEQLKNKKMFSSILISNDNQETLNDFANNLSRTIFCENLGI--------EKDSCDNCKRFENKSLSNFVVL 73  Mesoplasma florum
WP_012863067   7 KDTFLIDRLINEAAKDKESASYLFYGDKRVDLLFYALEFSKLFLCENFKDND------YCGVCNVCKSVDNYSYPDIEII 80  Sebaldella term...
WP_011697031   8 GQERTKRLLKRMARAGTLPHAVLFSGMAGVGKLRVARELAKLVNCLEPRDDE------SCDRCISCRKIDEGHHPDLFVI 81  Syntrophobacter...
WP_012507505  85 fpvesalldpgDS-AKKenkrftdakerydalleqkkenpylspamerSMGIltEQIISLQHKALFMPSE-GSKKIFIIS 162 Pelodictyon pha...
WP_012904163  84 -----------ST-EAT-------------------------------HISI--DEARELVMKAQDRPTV-GRWRVILVE 117 Rothia mucilagi...
3_pfamImport  81 a---------rPV-DEKtgr-------------------------vksSITV--EEIRKAGHFFSQTSGG-GNWRIVILD 122
Q2SIR6        89 -----------AP-EDGa-----------------------------kAIKI--DQVRGLGDFIYAKPQI-SRRRICVLT 124 Hahella chejuen...
WP_003774201  77 -----------SG-KEQ-------------------------------SIKK--SEIISLKEYFSQSSIEtAGHQVYIIE 111 Erysipelothrix ...
2_pfamImport  68 -----------NG-KDN-------------------------------SIKK--GNIELIQDTFKKSSLE-GKAKIYIIE 101
4_pfamImport  63 -----------IDgSQG-------------------------------EISK--ENLQEFLNRVSKSSLFaNKYKFLIIK 98 
Q6F0E2        74 -----------GD-GSL-------------------------------AINK--NDVVELMQKFSLTTNEvNKFKVYVLS 108 Mesoplasma florum
WP_012863067  81 -----------NK-DEQ-------------------------------GVKI--DDVREIILNAIESPYK-AKKKVYILN 114 Sebaldella term...
WP_011697031  82 -----------RS-EGT-------------------------------FIKL--DRIRELRERVRFRPFE-GRFRVVIIE 115 Syntrophobacter...
WP_012507505 163 QAERLHPSAANKLLKLLEEPPAHVVFILVSSRPEALLPTIRSRCQAVRFSRIT 215 Pelodictyon phaeoclathratiforme
WP_012904163 118 DTERMPERTSNVLLKAIEEPPPHTIWLLTAPSPNDVLVTIRSRCRPVQLPVPT 170 Rothia mucilaginosa
3_pfamImport 123 PADDMNRNAANAILKVLEEPPKRSLFLVLSHAPGKLLPTIRSRCMPLKLQTLG 175
Q2SIR6       125 PAEAMNAYSANAILKTLEEPPASVVILLVSQQISLLLPTIRSRCQIYTLAAPD 177 Hahella chejuensis KCTC 2396
WP_003774201 112 DVDNATVEAMNSLLKFLEEPEGDIVAILTTRNENRVLETIRSRCLTVHLESMn 164 Erysipelothrix rhusiopathiae
2_pfamImport 102 NIEYATKEAMNTLLKMLEEPTEGIYAIFTANNASRVLPTILSRCQVIDIKPD- 153
4_pfamImport  99 CVENITLKAANSILKFLENPPFNTIILLHTIKPQNVLKTIKSRCFIIDIRDDF 151
Q6F0E2       109 NAENLKNESANSLLKFIEEPPENTIAILLTKNKSQVLPTIKSRCKLIVLENEN 161 Mesoplasma florum
WP_012863067 115 GVEKLRKESANALLKIIEEPPKNLYFILLSKSLNII-PTIKSRVMTFVIKPLD 166 Sebaldella termitidis
WP_011697031 116 NAQHLHDESGNALLKVLEEPPRANLFLLTAIEPQMLLPTIVSRCSHLRLQPLE 168 Syntrophobacter fumaroxidans
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap