Conserved Protein Domain Family
KH_KhpA-B

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pfam13083: KH_KhpA-B (This model is not part of the current CDD release)
KhpA/KhpB, KH domain
The K homology domain is a common RNA-binding motif present in one or multiple copies in both prokaryotic and eukaryotic regulatory proteins. These motifs may act cooperatively to bind RNA in the case of multiple motifs, or independently in the case of single KH motif proteins. The structure of the prokaryotic KH domain consists of a two-layer alpha/beta fold in the arrangement alpha/beta(2)/alpha/beta. This entry represents the KH domain from RNA-binding protein KhpA and KhpB (also known as Jag or EloR). KhpA is a single-KH domain protein while KhpB also has a Jag-N domain (pfam14804) of unknown function and a R3H domain (pfam01424) at the C-terminal.
Statistics
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PSSM-Id: 520574
Aligned: 104 rows
Threshold Bit Score: 36.6904
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6AJF0          2 QELIAHIAKSLVDHPEEVKVSKS--VTDDTITLELAVAPDDLGKGIGKQGRTARAMRSILSATAAKEDMRSRLDI 74  Desulfotalea psychr...
27_pfamImport   1 EKTLLDLCTPLVDDKNSLSVKTMssTNENEVLLYVYANSEDVARLIGRKGSMASSIRQMMSIAARETHKRVSVKF 75 
5_pfamImport    1 QDFIREYAKLLANHPEDIEVVVDq-VNETYAQITIYANKADAGKIIGKEGKMIGAIKTVISGCKAKDGVSYKVNV 74 
Q30TE8          3 ADFVAQFAKLIASYPDDVRVEVK--EGDETAEILLYANQSDIGKLIGKEGKMIGAIKTVISGCKAKDGMSYRINV 75  Sulfurimonas denitr...
WP_012857413    3 EKFLEEFAKLLVDNPAGVRVERSd-IDGTFCEVVIYADKIDTGKLIGKDGKMINSLKTLISGCKAKDGISYRVTV 76  Sulfurospirillum de...
WP_012108433    3 EDFLKQYAMLIADHPEKVRTELIk-NS-DHTEIVIFADKFDTGKLIGKNGRMINAIKTVIIGYKAKDPVTYKITV 75  Campylobacter
Q0PAG8          3 ENFLREYAKLIADYPEQIDTQKIe-LSENFFEIVLFAHKVDTGKLIGKNGKMINAIKTVISAYKSKDASSYRVTV 76  Campylobacter jejuni
WP_013022692    3 QDFLTAYVKKIVEKPEVISVQETk-TED-GYDFVIFAANCDVGRIIGKEGKMISSIKAFISGCKAKNGLNYRVSA 75  Helicobacter mustelae
O25768         24 aTFLEKYLKKVVSFPQALSVEHTl-LEDKVKQITIYTHPSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVV 97  Helicobacter pylori
Q7VHM8          3 ENFIKEYAKKIANKPEAIQIQMQd-MEDNTCEIIILADAEDVGRLIGRDGKMVGSLKTFISGTKAKDGKNYRIAV 76  Helicobacter hepaticus
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