Conserved Protein Domain Family
DUF3892
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pfam13031: DUF3892 
Protein of unknown function (DUF3892)
DUF3892 is related to the truncated RNaseH fold-containing ribosome hibernation factors. Predicted to function as a possible conflict effector domain at the ribosome, based on comparable genome contextual associations with DUF2188, including repeated association with nucleotide-activated effector conflict systems.
Links
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Statistics
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PSSM-Id: 493094
Aligned: 45 rows
Threshold Bit Score: 36.8678
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q04FJ7            11 EIVAVKLfvdPKGNKRVVAVKlasprvtkDYRISYRASAHDMDQEIKSDISyfyinpsnrkkaNKVKVVSKk-------- 82  Oenococcus ...
Q6D347             5 QVLCINKsnrQSAHERITHIGgk-----nPDGASWKLTQQDAISGIESGKWkfyvn--agghsVWVIVAVSa-------- 69  Pectobacter...
WP_012239736       6 RVTCITRtnlQGAHERIQALGgv-----nADGTRWHRSQADVASDINSGRCdyyveq-pgghrVILVVARSs-------- 71  Sorangium c...
jgi:Acid345_0228  17 RITCTIH---SEDHERIAEVG---------CDDGSRFTESEAIARIENQGDefvvdr-pqghtAKVIVEKTk-------- 75 
WP_015273318       5 NIVCIHKpdrHNAHKHIEYVG---------VSGGQQFSQSQVISSIEEGKYrfyvd--rggskTWVEVVISn-------- 65  Liberibacte...
Q97JP3             8 GIYAVRYd-gNDKNNLIQSTKvcfi-kdnNVSMPVEFSRDFLIADIEDGNK--------------YYTMYKnnnkwerre 71  Clostridium...
BAL97900           8 GISAVRY---NSAHTHIDRVRahpd-ngdTIGAHSEYARATVISSIKNGTS-------------FVTILRGtdgnwkkgq 70 
WP_013838045       3 FIRAIRLahpGTSNEHIEAVQvs----rlTTGTLYTETREEVHRAIKRGVRyrtfde-rthqqADVAARVSs-------- 69  Isoptericol...
WP_015795867       5 RMTHKRLa-gGSGHEHIVRLWwtd--aanR-VG--DNSTAEFVGWIEAKTVaayvqd-sygnrVSVGVVTPq-------- 69  Catenulispo...
4_pfamImport       1 KIIAARLe-gGKFHESITKLRwvn--pgsGETG--ESFVSAIVAWLEDDDGkayvd--egihrVAVEIIKPt-------- 65 

Q04FJ7            83 ------nPKKSYVLTKDSDSEIDNLLKLP 105 Oenococcus oeni PSU-1
Q6D347            70 -------SGNKYLKTQNDGEQPNNLLSLP 91  Pectobacterium atrosepticum
WP_012239736      72 -------TGYVYVKTQADGELPNNLLSLP 93  Sorangium cellulosum
jgi:Acid345_0228  76 -------EGRKFLKTEADGEKPNNLLSLP 97 
WP_015273318      66 -------YGHKAIRTHPDYNLSNNLLSLP 87  Liberibacter crescens
Q97JP3            72 ivsieyiKGNPYVKIRLDGIEGDDLGELP 100 Clostridium acetobutylicum
BAL97900          71 pvfiikvKGVEYIKTVDNGKEADNLENLP 99 
WP_013838045      70 -------RGTRYIATVANGVETDNLLRLR 91  Isoptericola variabilis
WP_015795867      70 -------FGAKYLRTRADGKWTDNLLALP 91  Catenulispora acidiphila
4_pfamImport      66 -------FGPKFLRTRADGIWKNNLLELP 87
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