Conserved Protein Domain Family
Integrase_2

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pfam13009: Integrase_2 
Putative integrase
This family represents putative integrases found in association with IS elements.
Statistics
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PSSM-Id: 493077
Aligned: 9 rows
Threshold Bit Score: 354.097
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q12CV2        156 PRLLHWQELAAEWLGVQKSAVSVRRIALDKFLVQYILACDLPRHPMVFLTRT----------------------TPKPSL 213  Polaromonas s...
WP_012735320   38 PELAAWRILAVEWLSGETHNLGQRLQALSNFFERYLIHQGLPMDPAVFMAQA----------------------TQLPNF 95   Burkholderia ...
1_pfamImport    1 PQLEAWRVLAVEWLQGETSGVGWRLNALAAFFERYLVQQGLPLDPSVFLARS----------------------TVLPDF 58  
WP_015434818  161 PKLEDWRSLCAEWLKDQKAAVDVRREALDKFLTHYIHGQKLERNYGRFLLRE----------------------TEKPDF 218  Azoarcus sp. ...
Q87GP6         26 aEWQQWQELAAEWMMAQNGDIDTKLVALSRFFESYVLEHASYAIDVSLFFKGykg-----------------hlCSSEEL 88   Vibrio paraha...
WP_013819435  135 PKYKVWAEKIDEFMKQALGG-GTKITLLCRFVRIFIEKHDKSATPQELLTKKk---------------------VVIKPF 192  Methylomonas ...
Q07XE2        375 lEFNGWRDLFDSYIEQSQRNITMKKRTSIGFICKFIMENNYPSKPEEFLLKTtkv-----------------nnNQYEEF 437  Shewanella fr...
WP_011941798  354 PYLADIVELGREYIQSGTAYITATLARGFEKLFEYLIDRPDEINYLTSLSRDdiaagstcckdnggfpsyidylRTSQDI 433  Acidiphilium ...
WP_011798029  299 PTMIEWVELAKQHLAENPTNYRKRRSAVNVFIEHIAKNSTVNRSPAGYCDIKr---------------------RPDPLF 357  Polaromonas n...
Q12CV2        214 SEVLLKAKAKGavgslsaedVKVHKYVADFIDWVLLEKLSIED----DL-GHRIVPHELHNPVARLSRSG-----IAAPT 283  Polaromonas s...
WP_012735320   96 HQTACPDSTWG---------ISANNLIHNFLQFVLSRHFSQVG----ED-GSAKVLHGYRNPVLSMTRAG-----LPQRG 156  Burkholderia ...
1_pfamImport   59 YRTTCPDSANG---------IQYNNNIHAFLHFVLLREFSEAD----DN-GQPVVSPAFRNPVLRMSKSG-----LPRRD 119 
WP_015434818  219 AQVLVGAKREGtqvl-qkgdVEYNNTVANFLDWVLATKLGDPDtgewDR-------SRFHNPIQRLRKSG-----LATNT 285  Azoarcus sp. ...
Q87GP6         89 EKVTRKKVNSPyk------vQKYVNHASNFIDFVIEKVFSEED----DK-GNLI--PLVQNPLRKIKVQR-------NAT 148  Vibrio paraha...
WP_013819435  193 RDELEKLPTDNm-------rRNIILAVNEFLDYIIENDLTLED----DEtGEIVRVMEARNPFSLLSNDQsisnpV--RS 259  Methylomonas ...
Q07XE2        438 LKFFGEKSKSH-----------FHVIILEFLDYCLSQLCTFED----ED--EVLIHPDFRNPLSRFQSPLld-ikPNKLS 499  Shewanella fr...
WP_011941798  434 HRNQNKGSNKGersd--drmNQILSSTYSFLEWY--------R----DNkDQYFNVPLYRTDIPGQTRRG------WNSG 493  Acidiphilium ...
WP_011798029  358 hidg-------------nkgRQTMVVVYQFLNEVLHKVCIQAD----DN-AFPILMPGFANPLVKQTFIG------VNKG 413  Polaromonas n...
Q12CV2        284 ETTKSSLSIRYIKELRTMLAEGL-------------------------HFRDWVWAQQSMe-----gGSNGGDWFMVAPQ 333  Polaromonas s...
WP_012735320  157 ESVYSPLPYGYIDQLQQMLAAGP-------------------------HFRDWQWAQGALgskigqmGASAPDWFEVTED 211  Burkholderia ...
1_pfamImport  120 ESVHSPLPYGYIDELRQMLAAGP-------------------------NFCDWPWAQSALgveigqrGQGAPDWFEVTEG 174 
WP_015434818  286 QSDKGSLSIRYIRELRGMLAEGR-------------------------NFRDWRWAQQAMe-----eGKNGGDWFVVDPQ 335  Azoarcus sp. ...
Q87GP6        149 ETVRNPLPYRYIQDLRQILCPLPdkteltvleqnlkqgepllpayhyrHFKHWTWAQQQTg-----qGNNGGDWFEVEPE 223  Vibrio paraha...
WP_013819435  260 ESTKPCLQYHFVRKAQSWIVPDKa-----------------------rNFKDLTHLHQF-----------DTDWIKISQK 305  Methylomonas ...
Q07XE2        500 ESDKPLLAYTYVVKAREWILPIEs-----------------------kSLSHLSHLHDLM----------ESDWFDVDSS 546  Shewanella fr...
WP_011941798  494 KTTKLPVPVRVLNLCREIL-----------------------------TANDYEWPRSIT-----------------DDH 527  Acidiphilium ...
WP_011798029  414 ETHRESMPTRLIRQAMSIL-----------------------------TENDFAWAREV--------GKLSDNFRWKNPE 456  Polaromonas n...
Q12CV2        334 -AINPDDPDCVWRERDTTEHEQKthd-----lpPRVTELWSPVRAVALYVKLELPLRTFQVRMLDSGEADTWRYlh-gtQ 406  Polaromonas s...
WP_012735320  212 -QIDRSDPDCVWRMRKLSRNYRG----------GQVLQMWSPVRWVALLAKLILPLRTSQVRVLDSGEADTWRY-----T 275  Burkholderia ...
1_pfamImport  175 -QIDRNDPDCVWRVRKVSPKYRG----------GQVLEMWSPVRWVALLVKLILPLRTFQVRMLDSGEADTWRY-----S 238 
WP_015434818  336 -TIDPKDPDCVARQRAATKYERDtkg-----ypAEVWELWSPVRAVALYLKLELPLRTFQVRMLDSGEADTWRYvh-apG 408  Azoarcus sp. ...
Q87GP6        224 -LIDKSDPDCVWRTKEVTRYIKGegt-----kkITVHQIWSPVKAMVIFIKLHLPLRTYQVRMLDSGEADTWRY-----E 292  Vibrio paraha...
WP_013819435  306 -QIDYSDPDCVVRKQGNQYF------------------IWSPIDWIHTYALTKVPLRGRQIAYNDSGEGDLEIAdidekG 366  Methylomonas ...
Q07XE2        547 -LIDKNDLDCVYRYVERDRRKGKhtgelvgsynEKVCQMWSPVRFFALYTLLSVPARGQQILWCDSGEADKKVPel-vnG 624  Shewanella fr...
WP_011941798  528 vVVTKRDGRSISE--------------------------WCPVRCIALYLLFSIPIRAMSLRRLDSGEGDEFIFd---rE 578  Acidiphilium ...
WP_011798029  457 t--------------------------------REFESVWSPVRTYALMAKLILPARTYQIRHLDSSEGDSLRYe----E 500  Polaromonas n...
Q12CV2        407 GGSFVLND-SPLAtgSARRPYQRGVFHRNASESG-----AGLFINTNKTADITKPENAK----------GYIIPWA---- 466  Polaromonas s...
WP_012735320  276 AGGWELNG-NEIAegSESRPLQQGVFRRDNDRFNhgnalTVLYINTNKTADVSKSGSEN----------GYLLPWThgga 344  Burkholderia ...
1_pfamImport  239 AGEWTLNT-NRLArgSERRPLQQGVFRRSNPLSDgkdasTVLHINTNKTADIAKSGTEK----------GYVLPWSlggp 307 
WP_015434818  409 GGGFVLNH-GPLAtgSEKKPGQRGVFHRSANEQE-----AGFYINTNKTADINKAENDK----------GYVIPWA---- 468  Azoarcus sp. ...
Q87GP6        293 QGQWILNTkHDFAlgSEKRPFGKGIFRRIHDTMTgl-hsTGLYINTNKTADQNKDELER----------GYIIPWQ---- 357  Vibrio paraha...
WP_013819435  367 AILWVKNT-GS----LAGTTKSQSFVKKLADGN------LGMFVTTNKT-----NNHGL----------GYSIPWI---- 416  Methylomonas ...
Q07XE2        625 KVEWVANK-GP----LAGQTKKQGFIKEYSGSE------LGLYFTTNKT-----SRQEG----------GYDIPWA---- 674  Shewanella fr...
WP_011941798  579 SESWTKNK-LN----TAEAGRSVGVIHRIIDSDLngaslAGLFINSNKTRHPQRRVRRGrgpnlgafdfGYVIPWN---- 649  Acidiphilium ...
WP_011798029  501 NGTWGPNT-GKHA--PSNAGVERGVFRQYKRKDGsl--gAVLYFNTNKTGDIDKDKDKT----------GFVMPWE---- 561  Polaromonas n...
Q12CV2        467 -HETVLYWLDKLRQWQERYNPIRAPMAWR 494  Polaromonas sp. JS666
WP_012735320  345 tHQNVFYWFEKLRNWQEKYNPISRRTSWA 373  Burkholderia glumae
1_pfamImport  308 vHQDVFYWLEKLRNWQEKYNPVSRRAAWT 336 
WP_015434818  469 -NDEVLYWLEKLRNWQARYNPIAAPTPWT 496  Azoarcus sp. KH32C
Q87GP6        358 -NEEVLYWLEKLRNWQEKYNPIAKPTDCT 385  Vibrio parahaemolyticus
WP_013819435  417 -PEDLAYWLVKLRKWQQKYNAIDKPTPWS 444  Methylomonas methanica
Q07XE2        675 -PDNLDYWMIKLRHWQSKYNAIAEPTKWT 702  Shewanella frigidimarina NCIMB 400
WP_011941798  650 -NLELFKHIAYCRDWQIENNPVSSPRGLd 677  Acidiphilium cryptum
WP_011798029  562 -KLDALQLFARMRNWQEKYNQLDGPTNWT 589  Polaromonas naphthalenivorans
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