Conserved Protein Domain Family
DUF3880
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pfam12996: DUF3880 (This model is not part of the current CDD release)
DUF based on E. rectale Gene description (DUF3880)
Based on Eubacterium rectale gene EUBREC_3218. As seen in gene expression experiments , It appears to be upregulated in the presence of Bacteroides thetaiotaomicron vs when isolated in culture.
Links
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Statistics
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PSSM-Id: 520556
Aligned: 104 rows
Threshold Bit Score: 31.756
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_013279910  83 SWFFDSPPNLPTA----------------------ECmDYSCNKIYFFARAD------------------YEKY-KALGL 121 Butyrivibrio pr...
WP_104370991   3 FLFVNGPPIIKYGlaaglaeagedaaiievpgnieENpEYFREQLILQRPDFvvvegta----ilkpyqvLFPVlNEFNV 78  Desulfocucumis ...
WP_126307129   3 VLFLESHPMWRYGlpngfrdag----hevqvsgplTA-DNIPRIIGSFAPQLivmlgwtee-hislkrkwIREHvRAAGV 76  Methylomusa ana...
WP_090851664   3 VLFLESHPMWIYGlpngfrdag----hevkvsgplDK-LNLMTYVSNYNPDLimtmgwgpetanrenqqrIAEVtKKLDI 77  Litchfieldia salsa
WP_057772455   3 ILFLESHPMWIHGlpngfidag----hqvrisgplDD-LDIPKLISEFQPDLiitmgwgpenstidkqnkIYEGtKNENV 77  Cytobacillus da...
WP_213131242   3 ILFLETHPMWIHGlpngfkdlg----hhvklanphEV-EEILRTLNEFQPHLlftigwtpinntpelqkkIGEVtEASGL 77  Bacillus sp. FJ...
WP_156282177   3 IMFLESHPMWIHGlpngfrrlg------hqvctiapD-KVSPSTLRSFKPDFimtvgwtpannrawkqrrIAELaKLAGV 75  Paenibacillus s...
WP_057772457   3 VLFLESDPMWIYGlpngfcdag----hfvmvsgplTE-DSIVDILSSFQPELiitmghtte-htkekqkmIREYvTCTNI 76  Cytobacillus da...
WP_151533888   3 ILFLESDPMWIYGlpngfvdag----hevmvsgplMD-GTLEEMITSFKPDLiftmghtre-hsdgrrliIKKHvAHLGI 76  Cytobacillus de...
1_pfamImport   1 ILFLESNSMWIHGlpngfsdlg----hevlvsgplTE-GRIKEILSFFQPELiitmghtke-htkekqdwLRKYiQPLQI 74 

WP_013279910 122 DNVY-YLPLAVNVDRLR-QIkvdekkYCCEISFVGKLY 157 Butyrivibrio proteoclasticus
WP_104370991  79 PLIFwAIDDPVEFKNFSlHLa-----R--RAKYVFTTD 109 Desulfocucumis palustris
WP_126307129  77 PFVYwATEDPIHTEIFSiPFi-----TQVQPHFVFTVS 109 Methylomusa anaerophila
WP_090851664  78 PHVYwATEDPTSTEIFSlLYi-----EATKPDFVFTIC 110 Litchfieldia salsa
WP_057772455  78 PHVYwATEDPTSTEIFTmPYi-----RRTHPDFVFTIC 110 Cytobacillus dafuensis
WP_213131242  78 PHIYwATEDPGHTQRFSlPYi-----QRTKPDFVFTIC 110 Bacillus sp. FJAT-49711
WP_156282177  76 PHVYwSTEDPGYTDTFSlPLi-----RRAKPDFVFTIH 108 Paenibacillus sp. NEAU-GSW1
WP_057772457  77 PNVYwATEDPGYTLNFSlPLi-----QTIEPDFVFTIC 109 Cytobacillus dafuensis
WP_151533888  77 PHIYwATEDPGYTHIFSlPLi-----ETIQPDFIFTIC 109 Cytobacillus depressus
1_pfamImport  75 PHIYwATEDPGYTFTFTlPYi-----ETVRPDFVFTIC 107
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