Conserved Protein Domain Family
DUF3876

?
pfam12992: DUF3876 (This model is not part of the current CDD release)
Domain of unknown function, B
Theta Gene description (DUF3876). Based on Bacteroides thetaiotaomicron gene BT_0092, a conserved protein found in a conjugate transposon. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or other bacterial species vs when in culture.
Statistics
?
PSSM-Id: 493063
Aligned: 6 rows
Threshold Bit Score: 141.829
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q8A5A2         4 TNeDYPSFNLFSIVGTWESVNLNPTVIIYRNGKEYLLSIVYVSETTKQASPATYEIQQDGSQYFIATASkRLSVDYDPAK 83  Bacteroides the...
WP_004291516  25 SC-DVADNRRDMLCGNWESVEGKPDVLIYKEGEAYKVTVFRRSGLRRKLKPETYLLQEENGNLFMNTGF-RIDVSYNEAT 102 eubacteria
2_pfamImport   1 SCkETNAERLEKMCGEWVSTGGKPPFTLWEEDGRYRVTVMHRN-HTGGSEAETYLVRETEGVLFIETGF-AVMMDYDREK 78 
1_pfamImport   1 SCkETNADRLRAMRGDWESVKNRPAFTLFEENGHYRVTTYRKT-YRGTIQTETYQISEQDGNLFIETGL-SVLLTYDKEN 78 
4_pfamImport   1 SCsESRFKDCDRLCGSWSSVEGKPDVLIYKEGDAYKVTVFARSGKTRKLKPETYLLVEENGNLFINTGY-RIDIAYNEAA 79 
3_pfamImport   1 SCsESGIDR-DKICGTWTSVEGRPDVLVYKEGECYKVTVFSRSGRTRRLKPQTYLLVEENGNLFVNTGY-RVDVSYNEAA 78 
Q8A5A2        84 DVLSISSLGDYLR 96  Bacteroides thetaiotaomicron
WP_004291516 103 DVLTFSPNGDYVR 115 eubacteria
2_pfamImport  79 DRIRLSPGGEYRR 91 
1_pfamImport  79 DRILLSPGGEYKR 91 
4_pfamImport  80 DVLTFSPNGDYVR 92 
3_pfamImport  79 DVLTFSPGGDYVR 91 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap