3KD4


Conserved Protein Domain Family
DUF3857
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pfam12969: DUF3857 (This model is not part of the current CDD release)
Domain of Unknown Function with PDB structure (DUF3857)
This family is based on the first domain of the PDB structure PDB:3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.
Links
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Statistics
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PSSM-Id: 520547
Aligned: 82 rows
Threshold Bit Score: 59.2602
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Download Cn3D
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3KD4_A            24 EYRSSXELTLFTHTAXnStYGESFIvYNpdfqTLKIHSSYTRQKDGTIVKtPDNAFVEVLPRFAADApaYNQLKEXVVVH 103  Parabacter...
CDA77862          59 VFSVVKGVKVQNLNGVmA-NRILKYdYDpltaAARFKVVKIYHEDGSTTDvDVSKACDYTAPARAi---YWGARQIMLQL 134 
9_pfamImport       6 SFAVCRAVQVQTPVGAlQ-QRVLKYdYDpltaAAVFKRVTIYHSDGTYTPvDVSKTCDYAAPARAi---YWGARQIMLEL 81  
WP_012239855     696 SRFRQVVFQPLTDEAAaS-ARQYAFeYQadrqTVSLRAAKVYRADGKVDGaIESGESGANNPALAm---YTSARTFYVSF 771  Sorangium ...
Q2IMI2           652 STYTQSVVKVLTPRGAdQ-ARRQTVsWApdrqEVRVERARILKPDGTVIEaHDESERSASEPWYRl---YYDLTARTLSF 727  Anaeromyxo...
WP_011984583     650 ATFHQQVVKIVSARGAeA-FRRHVIgWTpdrqDVRVERVRIVKPDGSSVEtHDAAERSASEPWYRl---YYDTRTRTLSF 725  Anaeromyxo...
Q1IM94            77 QETTTLRVKIQSDAGVkA-WGQLVFgYNsdsdEMQIAYARVRKPDGKVIDtPPDSVRDMTSSVEREApvYTDYREKHLTV 155  Candidatus...
WP_014267631      60 SKDISAIVEIRDEAAVkS-WSVLPLpFAssseHVVIDYIRVRRADGTIVEtPPSDAQELPAAVTREApfYSDLKEDQIPV 138  Granulicel...
WP_013578457      75 YSEHSMAIRVQSEAAVrE-LGIVNVpFAsaseKVEIQYVRVRRPDGTVLQtAVSAALEQPQAVTREApfYSDLKQMQLPV 153  Granulicel...
jgi:AciPR4_2895   69 DVVQHVIVRVQSDGVArQ-FSVLNLsYAsansTATMEFVRVHKPDGSTINtPVNEAMEMPAEVTREApmYSDLKEKHLPV 147 

3KD4_A           104 TGLELGATIY-------LDYSIitkpgy-----------ypaldiNERLQEtS---PVKECKVSISVPE 151  Parabacteroides dista...
CDA77862         135 DGLVPGDVIYyeidkkgFTYALlgadegddsrf--ippmrgqfydIVPFWAaE---PTIRKVYSVGIPE 198 
9_pfamImport      82 GQLEPGDIIDyeidkkgFTYALlgdmpqegddsrfippmrgqfydIVPFWSsD---PTLRKVYRVSLPA 147 
WP_012239855     772 PRLNAGDVVE-------LRYRVddvsprne--------iadhfgeIEFLQGdE---PIASSEYVLITPK 822  Sorangium cellulosum
Q2IMI2           728 PALAPGDVLE-------VAWRLedvagenl--------lsdyfgdLTFVDDtT---RKARFDYVLLVPA 778  Anaeromyxobacter deha...
WP_011984583     726 PSLGAGDVLE-------VAWRIedsarenl--------lsdyfgdLTFLDDtT---RKARVDYVLLVPE 776  Anaeromyxobacter sp. ...
Q1IM94           156 SSLQVGDILE-------YQRIRkitkpat----------pnefftEHTFMKnY---IILDEQIEFDVPV 204  Candidatus Koribacter...
WP_014267631     139 RSLRAGDHLE-------YKVRIlrthpea----------pghfwgEEIFFTpSlgkVVLEESVELHVPA 190  Granulicella mallensis
WP_013578457     154 KSLRAGDTLE-------WKVRItrtkaea----------pgqfwsQDTFVSqG---IALSETLELRIPK 202  Granulicella tundricola
jgi:AciPR4_2895  148 RSLASGDRLE-------YQFHTvltkaqa----------pgqfwgAEHFLVqGg--VVLEQSLTLAVPE 197
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