Conserved Protein Domain Family
DUF3850

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pfam12961: DUF3850 (493038 is an unknown moldel)
Domain of Unknown Function with PDB structure (DUF3850)
The search results from NCBI sequence alignment indicates a conserved domain belonging to ASCH superfamily. Dali searching results show that the protein is a structurally similar to the PUA domain, suggesting it may be involved in RNA recognition. It has been reported that the deletion of PUA genes results in impaired growth (RluD) and competitive disadvantage (TruB) in Escherichia coli. Suggestions have been put forward that, apart from their usual catalytic role, certain PUS enzymes (e.g. TruB) may also act as chaperones for RNA folding. The interface interaction indicates that the biomolecule of protein NP_809782.1 should be a dimer.
Statistics
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PSSM-Id: 493038
Aligned: 17 rows
Threshold Bit Score: 101.969
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CCY66815       3 THHIKLKEQFCDAVLSGEKPFEIRR-NDRCYQKGDHIRFVPIKnfsvegfsstiPFDHPIKDKEYRITYIfsgW----II 77 
CDC66705     129 THTLKLEECFCEAVVTGKKCFEIRK-NDRGFQPGDTIEFIPVSng--------hPAIHVISNRRYRITYVlsgW----GL 195
CDA13152       2 IHALKTKPEYFGSVRNGEKTFEVRK-KDRPFEIGDYAALNEIDe---------sGTYYTGRALLMRITYVladEe---fC 68 
1_pfamImport   1 CHDLKILPQFFQAVVDGRKTFELRReDDRMFHIGDTLTLCEWRp----------GSGHTGRQCKVAVVYIlrhAdfadGI 70 
CDC57412     328 QHELKIVASDYEDVISGKKSFELRK-NDRGYKQGDSLKMLEFK-----------DGKHTGRTIDADIIYMledYt---GL 392
Q8CWZ2         3 THKIKLSHCFFDDVASGRKNFELRK-NDRHYQVGDCLCLCEVK-----------EKRLTGRKLMVAVTYKlqdFt---GL 67  Streptococcus m...
CDA90581       3 AIRKKILPIYFDAVESRQKNFEIRK-DDDDVQVGDKLVLGEWKe----------NYGYTGRFATRKVKFVlrnVpe-yGL 70 
WP_052346721  19 THELKVWPACFAAVETGAKPFDVRE-NDRHFSVGDVLLMREYEp---------eSEQYSGRTTTRWISYIlngGa--fGV 86  Hymenobacter sw...
WP_020448898  13 IHKLKILLQDFEQAITGIKNFEQIN-DNGDYQVNDLLVLKEWDp---------dTEGFTGREAARRIRHVp-kNv--pCL 79  Candidatus Meth...
WP_020449488   2 IHELKIMPDYFEAVVIGAKTFELIN-DDRGFQIRDILILKEWDp---------dAEEFTGREVVRRICYVl-kRv--pGL 68  Candidatus Meth...
CCY66815      78 PRDYVVLGI 86 
CDC66705     196 KNGYVAFGI 204
CDA13152      69 KPGYVVLGL 77 
1_pfamImport  71 PEGYAVLSI 79 
CDC57412     393 TEGYCILGI 401
Q8CWZ2        68 SDGYCILGI 76  Streptococcus mutans
CDA90581      71 KEGYCIIGW 79 
WP_052346721  87 AAGWCILGF 95  Hymenobacter swuensis
WP_020448898  80 NSEYAILDI 88  Candidatus Methanomassiliicoccus intestinalis
WP_020449488  69 TSGYAILGI 77  Candidatus Methanomassiliicoccus intestinalis
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