Conserved Protein Domain Family
Sec16

?
pfam12932: Sec16 (This model is not part of the current CDD release)
Vesicle coat trafficking protein Sec16 mid-region
Sec16 is a multi-domain vesicle coat protein. This central region is the functional part of the molecules and thus is vital for the family's role in mediating the movement of protein-cargo between the organelles of the secretory pathway.
Statistics
?
PSSM-Id: 493017
Aligned: 87 rows
Threshold Bit Score: 58.7698
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_011389100 1075 IPIASFGIGGKLVSYFPtsrastgaeg-adgaggssnvYGSYSYN------------------------TSSYP------ 1123
XP_019081245  538 HPLVTFGFGGKLLVM-----------------------KDNGSFLtnss-----------------yghQDSAG------ 571 
Q9FGK8        514 HALVNFGFGGKLILM-----------------------KDDSGSLqnss-----------------fgsQKGTG------ 547  thale cress
9_pfamImport    1 HALVSFGFGGKLIVM-----------------------KDHSSFGnss------------------fgsQNPVG------ 33  
XP_006852622  615 HALVTFGFGGKLVIM-----------------------KSPSSSFg----------------------sQDPVG------ 643 
XP_020523770  768 HALVTFAFGGKLVVM-----------------------KPNNSFSssaa-----------------igsQDPAG------ 801 
XP_002953837 2245 HVVFAFGFGGRAVLMRPpasgtdtgtmavfggpgplqlLPLAALTqthlaggnpr----qppsqqqpssTSGSS------ 2314
1_pfamImport    1 --VASFGFGGKLVTMHP---------------------RRKIRLAp----------------------aPGVVPspddgp 35  
5_pfamImport    1 --LASFGFGGNVVTMFP---------------------KRKLRLNiagssyrnsprg-apvpsefensnGELRK------ 50  
XP_002908536 1698 scLASFGFGGNVVTMFP---------------------KRKLRLNiagssfrnsprgpatpsafdnggkGELRK------ 1750
XP_011389100 1124 ----T-QLKIQS------------------LSSLVSSTAYASAfdp-----------ltFPGPVyegpsgtnalsratga 1169
XP_019081245  572 ----G-VVNVLN------------------LMDVVVGKNDSLCtgtggrdyfhilshqsFPGPLv--------------- 613 
Q9FGK8        548 ----GsSISVLN------------------LAEVISGSASYSSlgenslsyfscldqqsLPGPLv--------------- 590  thale cress
9_pfamImport   34 ----G-SISVLS------------------LMDVVSERFDNSSlvvgacdytralcqqsFPGPLv--------------- 75  
XP_006852622  644 ----G-SISIHD------------------LLDVVLDKTDVANggngacdyfnalcqqsFPGPLv--------------- 685 
XP_020523770  802 ----G-SISIIN------------------LMDIVVDKNDIMKdgsgassyfhalcqqsFPGPLv--------------- 843 
XP_002953837 2315 ----GgPTKADKriprggqaaastpvleplLRQLAA-----------------------FPGPL---------------- 2351
1_pfamImport   36 alrkG-PVNVWS------------------LKDVASPETVVCDaa-------------aFPGPA---------------- 67  
5_pfamImport   51 ----G-PVNVYR------------------MDQLHPKDKEFEQmd-------------iFPGPL---------------- 78  
XP_002908536 1751 ----G-PVNLYR------------------MDQLHPKNKEFEQmd-------------mFPGPL---------------- 1778
XP_011389100 1170 asASKTKKAA-VLKHLEERIQELSAGVGYlrrrpsfsasstgsnrgtqaaqdQDGELE---ARRTEDKVLLLRLLRLLVE 1245
XP_019081245  614 --GGNVGSRE-LNKWVDEKIAKCESSNMD--------------------------------YRKGEVLRLLFSLLKIACQ 658 
Q9FGK8        591 --GGNVGSKD-LHKWLDERILNCESSYMD--------------------------------FSRGKLLKMLLSLLRISCQ 635  thale cress
9_pfamImport   76 --GGSPSIKE-LNKWIDERIANSESPDSD--------------------------------YRKGEVLRLLLSLLKIACQ 120 
XP_006852622  686 --GGSVANKD-LYKWIDERIANCETSSTY--------------------------------FRKGELLRMLVSLLKICCQ 730 
XP_020523770  844 --GGSASSRD-VYKLIDERIANCAVSSAD--------------------------------FREGGHLRLLLSLLKICCQ 888 
XP_002953837 2352 ---GPATSKDkVLKWLSDHAAACGADDAPweqqt--------------nagdAGGPTAaaaAATAAQRQLLWEVLQLMVK 2414
1_pfamImport   68 ----SSAPVDkLREYVEKRATAAAAEVDEa-------------------------------GAEAEGKRLLWSVAGLALE 112 
5_pfamImport   79 --TEDVSDEA-ILEYLDERLKRSETSMTAd-------------------------------EAENEDELLLLGVLRVLVK 124 
XP_002908536 1779 --TENVSDEA-ILEYLNDRLKRSEAPTSIa-------------------------------EAEDENDRLLLGILRVMVK 1824
XP_011389100 1246 NDG 1248
XP_019081245  659 YYG 661 
Q9FGK8        636 YYG 638  thale cress
9_pfamImport  121 YYG 123 
XP_006852622  731 YYG 733 
XP_020523770  889 HYG 891 
XP_002953837 2415 HSe 2417
1_pfamImport  113 FK- 114 
5_pfamImport  125 CNG 127 
XP_002908536 1825 CNG 1827
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap