Conserved Protein Domain Family
OppC_N

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pfam12911: OppC_N (This model is not part of the current CDD release)
N-terminal TM domain of oligopeptide transport permease C
Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Statistics
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PSSM-Id: 520520
Aligned: 477 rows
Threshold Bit Score: 28.1685
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013458328  15 STWHLA--W-----R---RFRKHRMAQVSMVVIVILVAASLA----APLL--VSlgwi----pdpnEQPsGaNlkafyFL 74  Oceanithermus p...
WP_012947281  36 SLWSDA--W-----R---ELKRNPLFWIGTVLGVLFVLMSLF-----PQF--FAr----------gADPrAcSls-nsNQ 87  Geodermatophilu...
WP_013133532  29 SLWRDS--W-----D---DLKRRKLFWFSLALLILFLLMAAF-----PQL--FTq-----------KNPdYaEla-ksLE 79  Thermobispora b...
WP_006311991  15 SAGYMM--W-----Y---RFSRNPAAVIGSLILLSVLVLAVF----APWLtpYPkhig-----avvDFR-A-R-----HM 68  Agrobacterium
WP_012946554  34 TLGL---------------LARNPTAAVAATVLLGIVLMAVF----DESLapEGpn--------viAVE-D-R-----LQ 79  Geodermatophilu...
WP_013179156  16 SLGSGA--L-----R---RLARNPRAVFGALVLALLIVAAIFadqlSPHPp-----------------NvQ-Nlr-nrLQ 66  Truepera radiov...
WP_012171152  24 SFWRNV--G-----R---RLLRDPVSMVCLTLLLLIVLAAIF----APYVapHDp----------yRT----Sma-rrLI 74  Azorhizobium ca...
WP_012873663  19 SFGKRVg----------hYVRRHPGGVLGSTLVLLIVLIAIF----ANQIagq-------------dpTaL-Npa-erLA 69  Sphaerobacter t...
WP_015413329   3 SRWQRFreS-----FflySFLRDPMAYVSFAILM-ILLIGAF----GAPLiaphd---------pynpTtI-Dim-nsEL 61  Pseudodesulfovi...
Q5LLY9        11 SRWSRI--WnsnmgY---SFRRNPVAMVSLAIFLVIAVMAFF----APLIapFDpydpaqidimnsEY------------ 69  Ruegeria pomeroyi
WP_013458328  75 PP 76  Oceanithermus profundus
WP_012947281  88 TP 89  Geodermatophilus obscurus
WP_013133532  80 GP 81  Thermobispora bispora
WP_006311991  69 PP 70  Agrobacterium
WP_012946554  80 PP 81  Geodermatophilus obscurus
WP_013179156  67 PP 68  Truepera radiovictrix
WP_012171152  75 AP 76  Azorhizobium caulinodans
WP_012873663  70 GP 71  Sphaerobacter thermophilus
WP_015413329  62 PP 63  Pseudodesulfovibrio piezophilus
Q5LLY9        70 PP 71  Ruegeria pomeroyi
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