Conserved Protein Domain Family
Collagen_bind_2

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pfam12904: Collagen_bind_2 
Putative collagen-binding domain of a collagenase
This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. It is the C-terminal part of the PDB:3kzs structure.
Statistics
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PSSM-Id: 492994
Aligned: 29 rows
Threshold Bit Score: 78.4439
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013562953  377 VPDQGLVADELdrREGPHHVQAARRADnrAAVLYLPEGRPIRVNLEPLVGPTL-AVQWFNPRDGSLQTaapVSrtQDADg 455  Isosphaera pa...
Q5BCD9        306 IPAQDIIVGDA--GVGDARITPTRDSDglWIMVYTPTGQPFEITTTDLRSSNI-TASWYDLLSGEYKP---FQfqRCSEr 379  Aspergillus n...
WP_014434509  343 IPDQSILLDNP--TERGSHMRATRDEAgsYALVYTPLVQPIAVTLEWANDSQV-RAWWFNPRTGGASL---IG--DFAA- 413  Caldilinea ae...
CCX37799      334 hyDPSLLCGN---YEGMAHMVAAVGDG--YGYVYLPLGLPVTVDLSKISRANCvRAFWFDPRTGTETL---FS--VLPA- 402 
WP_008780729  374 rPDLSVLFGIN--YNDASYITPVLAKDktFILVYLSQGQDVRIQMSKLRSLG--KAYWFNPRNGARTL---IG--PVEN- 443  Parabacteroid...
WP_015826300  355 VPDQSLILDGP--VHGAAKIRAARSEDgaRIIAYSPRGEALTLDLNNLSSAMH-KQVWFDPRYGVSYE---FR--NEQS- 425  Hirschia baltica
CCY39332      175 tPDQSMIVSGN--TSPKHKIVALRGEGfaWI--YFPNGEKGQINFNKAGDVQRmKLSWLNPRTGEWSD---AA--PVGT- 244 
WP_013042242 1185 ananSLIGNTS--NNNDKYCFAKTGE---YYAIYLPNGGTTNLNLSGATGTF--DILWYDPRNGGALQagtVS--SVIGg 1255 Coraliomargar...
WP_012876585  328 IPDQSVILSEV--GEGTHHVRATRDAHgsYLMVYIPSGRTVDIDLSPLQGERV-SAWWYDPRRGTAQH---IG--VMPK- 398  Thermobaculum...
WP_016483805  330 VPDQNLLAADS--DDPLRHIAVTRDREnrYALFYLPYGGRLVANLRPLPEERF-LAQWFDPRTGIYYP---LG--EHIA- 400  Chthonomonas ...
WP_013562953  456 STLQRFAPPddQQGRGHDWILLLQ 479  Isosphaera pallida
Q5BCD9        380 KGSKLFTPPt-ANGH-SDWVLVLE 401  Aspergillus nidulans
WP_014434509  414 RGAVTFHPPf----DGPDWVLVLD 433  Caldilinea aerophila
CCX37799      403 QGKTTLVPP--SSGKGCDWILILE 424 
WP_008780729  444 KGIRTFNAPgeAGERGNDWILILE 467  Parabacteroides distasonis
WP_015826300  426 HGIQSFVPP--TSGKGEDWVLLLE 447  Hirschia baltica
CCY39332      245 SGIQTIIPPs-S-GRGNDWLLIAE 266 
WP_013042242 1256 SNVSVGNAPssT---TDDWAILVv 1276 Coraliomargarita akajimensis
WP_012876585  399 GPHVAFSPP----GGGPDWVLVLD 418  Thermobaculum terrenum
WP_016483805  401 RGEIEFVAP--SVGRGEDWVLVLD 422  Chthonomonas calidirosea
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