3KOP


Conserved Protein Domain Family
DUF3830

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pfam12903: DUF3830 (This model is not part of the current CDD release)
Protein of unknown function (DUF3830)
This is a family of bacterial and archaeal proteins, the structure for one of whose members has been characterised. PDB:3kop probably adopts a new hexameric form compared to previous structures. The putative active is near the domain interface. 3kop is most closely related, structurally to PDB:1zx8, where the potential active site is located near residues E51 and Y53 (conserved in 1zx8). Beyond the two residues above, the other residues are not conserved. Also the shape of the active site differs from that of 1zx8. PDB:1zx8 belongs to family DUF369. pfam04126, which is part of the cyclophilin-like clan.
Statistics
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PSSM-Id: 520515
Aligned: 14 rows
Threshold Bit Score: 169.881
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3KOP_A         26 ITLEKRGVTCKALLLDDVAPRTSKAVWDAL---PQSSQVFHGKYARNEIYNLVPAFAp------kEPGAENTTVTPIPGD 96  Arthrobacter s...
2_pfamImport    1 ITLTSRGVSCRARLLEDAAPRTCAVVWNAL---PVAGQAYHGKYARNEVYTLLPPMG--------APGRENTTVTPIPGD 69 
WP_011874146    7 ITLEKRGVSCVAELLDKDAPRTCEVVWQAL---PQAGPVHHAKYARNEIYTMVPHFAa------qEPGQENPTVTPIPGD 77  Saccharopolyspora
jgi:Psed_1035  22 ITLAKRGVSCVAELLEKEAPRTSAAVWEALgrgDLGGDAQHAKYARNEVYTMVPRFGd-------EIGYENTTVTPIPGD 94 
WP_012835750    8 VTLETRGVTATARLLDDEAPRTAGVVWDAL---PLGGQVYHGKFARNEIYTLLPSFAa------tEPGPENTTVTPIPGD 78  Gordonia bronc...
1_pfamImport    1 VALSKRGVECTARLLFDKAPLTCAAVWEAL---PLAGDVYHAKYARNEIYALLPAFAa------qEPPLENPTVTPIPGD 71 
Q82CV7          8 VALDKRAVRCTARLLDDRAPLTCQAVWDAL---PLGSDVYHAKYARNEVYALFPPFAa------qEPPLENPTVTPIPGD 78  Streptomyces a...
3_pfamImport    1 LSIDVGSYRFVARLEEEAAPRTCAAFLKLL---PFSNQVIHSRWSGEAVWVPLGDFDt-------GLGFENHTSHPSRGD 70 
WP_013651304    8 lkfveadVQGIISLYWDNAPETCKAIWGALe-kPIRWPATHAMFSGPEIMMGLPEEArnf--dptALPPENQTVLPEVGE 84  Polymorphum gi...
WP_025292231    6 ftePGSGLDARCELLDAAAPASCNFLWSLAe-rNARFDAMHAIWTGPEISVPMPSAAlpegmdqpAIPAENATSYPDTGD 84  Sphingomonas s...
3KOP_A         97 VCYFTFTSNDL--KTPSHGYEadsgtdevqtivdLAVFYGRNNLLLNGDTGWVPGNVFAT-IVEGLDEXAAACQDIWXGG 173 Arthrobacter s...
2_pfamImport   70 VCFFSFEPGDI--GNPAYGYDegaqgnspvgatdLAIFYGRNNLLLNGDVGWVPGNVFAT-IEDGLAEMAAACNDLWMAG 146
WP_011874146   78 VVYFSFHGGML--DRE---FKeekdihelpgvidLAIFYGRNNLLLNGDVGWVPGNVYAT-IVEGLDRMAEACNDVWRSG 151 Saccharopolyspora
jgi:Psed_1035  95 VVYFSFSGGML--DQS---FKadqnidhlpgvidLAIFYGRNNLLLNGDVGWVPGNVYAT-IVEGLDVMAEACHDVWRSG 168
WP_012835750   79 LCYFTFDGV-L--DNPAYGYQpdsapaehrllidLAVFYGRNNLLINGDVGWVPGNVFAT-ITEGLDAFATACNDIWMGG 154 Gordonia bronc...
1_pfamImport   72 LCYFTFTDVQL--GTDSYGYEsgaahrgratvvdLALFYERNNLLLNGDTGWVPGIVWGE-VVEGLDVMAEACQDLWRTG 148
Q82CV7         79 LCYFTFSGAEL--GTKAYGYGkaqqe----tvvdLALFYERNNLLLNGDVGWVPGIVWGQ-VVEGLDAMAEACNDLWRSG 151 Streptomyces a...
3_pfamImport   71 LLLY-----------PGGFSE-------------TEILFAYGSSQFASKMGQLAGNHFLT-VVEGADQLMDMGRTVLWKG 125
WP_013651304   85 VLWFYQPK-NFfkIDPSEFWE-------------IGLFYGVGGRTF-GPTGWIPCTYFGR-MTHNLDAVAEQCRLIRTEG 148 Polymorphum gi...
WP_025292231   85 IVLAYLAAGSTrgLPPGNFYD-------------IGVFYGPGGRLL-MPFGWIQANVCARiLPEDLAKAQADCRTIRRNG 150 Sphingomonas s...
3KOP_A        174 ARDETLTF 181 Arthrobacter sp. FB24
2_pfamImport  147 AVGEQLAF 154
WP_011874146  152 SVGERLVY 159 Saccharopolyspora
jgi:Psed_1035 169 SVGERLVY 176
WP_012835750  155 ARGEKLSY 162 Gordonia bronchialis
1_pfamImport  149 AAGETLSF 156
Q82CV7        152 AQGETLSF 159 Streptomyces avermitilis
3_pfamImport  126 AQPIRFTD 133
WP_013651304  149 AKVVEigr 156 Polymorphum gilvum
WP_025292231  151 ACTFSiel 158 Sphingomonas sanxanigenens
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