2LUY


Conserved Protein Domain Family
Stc1

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pfam12898: Stc1 (This model is not part of the current CDD release)
Stc1 domain
The domain contains 8 conserved cysteines that may bind to zinc. In S. pombe this protein acts as a protein linker which links the chromatin modifying CLRC complex to RNAi by tethering it to the RITS complex. The region is reported as a LIM domain here, but has a slightly different arrangement of its CxxC pairs from the Pfam LIM domain pfam00412, hence why it is not part of that family. The tandem zinc-finger structure could mediate protein-protein interactions.
Statistics
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PSSM-Id: 520510
Aligned: 56 rows
Threshold Bit Score: 49.199
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LUY_A        13 CMRCRKVKGIDSYSKTQWSK-----TFTFvrgrtvsvsdpKVICRTCQPKQH--------DSIWCT-ACQQTKGINEFSK 78  Schizosaccharom...
XP_003657978   7 CEHG-EWKTRDQFSKTQLEKy----EQQArngta-tpartGIRCKEHSAKQA--------LELKCNgPCGRWRELRFFSK 72 
XP_003667181   7 CEQG-EWKPRASFSKNQLSKy----DRNAqkgss-tpsktGIRCMEHSSKPV--------LEEKCRgPCGRWREKRLFSK 72 
Q2GNQ5         8 CQQG-EWKTRDQFSNRQLSKy----DRnekat----psktGIRCVEHSGGPV--------NELTCKgPCGLKRDRRFFSK 70  Chaetomium glob...
EPE06472      27 CFTNGEWKERSEFSTRQLDKfsrsga---------sagnsQISCREHTTQVR--------RELKCEgPCGDWYPLEVFSR 89 
ERS96357      21 CFAGGEWKPRSEFSNRQLEKfararv---------ppdqsEISCRAHSTQIR--------RELKCEgPCAKWQPIENFSR 83 
XP_006691898  18 CVGGNHWVYLTELSHSQRQKyhnlkNAGRatp-----cnaQICCPEHVDMvdgngnirpkdgVECD-ICQRVLPPDAFSK 91 
XP_003715357  13 CTNGSHWAPRGDFSKSQLQKw----HGSFgd--------tKISCSKHTNLAA--------AELRCTgPCGRVLAVTCFSK 72 
KLU89668     132 CYNGQHHCRREDFTASQLLKy----GGGVgr-------hsRMSCHKHTSGAA--------TELKCLgYCARVLPVSRFSK 192
XP_006666283  18 CKVGGEWKNLSDFSNAQQKNl----RY-LssgrhldpahsGMTCKQHSAGAR--------AEMRCE-VCMLVKSIDDFSK 83 
2LUY_A        79 AQRHVLD-PRCQICVH 93  Schizosaccharomyces pombe 972h-
XP_003657978  73 STRRNGKnRRCDPdcl 88 
XP_003667181  73 STVRK-GvYWCVDCVD 87 
Q2GNQ5        71 RTIQH-DtFWCVHCTE 85  Chaetomium globosum CBS 148.51
EPE06472      90 STRSH-SkTWCLHCTE 104
ERS96357      84 STRNH-SkTWCTDCTD 98 
XP_006691898  92 STFRS-GqPICKGCrs 106
XP_003715357  73 NQRSAGGsQECLDCVA 88 
KLU89668     193 MQRSSKGrQHCMECID 208
XP_006666283  84 NSRRN-GeSQCRRCVA 98 
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