Conserved Protein Domain Family
PBP_like_2

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pfam12849: PBP_like_2 (This model is not part of the current CDD release)
PBP superfamily domain
This domain belongs to the periplasmic binding protein superfamily.
Statistics
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PSSM-Id: 492952
Aligned: 51 rows
Threshold Bit Score: 92.5753
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012410596  39 STTPPPAGVTSinglgastvntlfvgtgetnpcpfgskgswfnVFGVGNPPSLNADLAAITNscpvgtYGPVVnNDTFRY 118 Nostoc punctiforme
WP_012573299  32 DSTTGDTLSGK--------------------------------VRISGSFALYPMMVKWAET------FKILHpDVSFDI 73  Candidatus Azob...
WP_015947605  33 DVKGGLGLDAD--------------------------------VVVGGSGSALGAFSLLAEA------YMAEHpGVS--V 72  Desulfatibacill...
WP_012619303  43 SVETTQPIA----------------------------------LTTSGAPALSSVLSEAGLS------AARQYpGLTLMV 82  Methanosphaerul...
WP_011585396  26 STNASSTPVDS--------------------------------VTVLCDPSWESIVRTFITT------YEGLNpHRKVTL 67  Cytophaga hutch...
WP_015813506  26 NGDLDNPRQGT--------------------------------ITIAADESFKPLVNSLTSA------YEGIYpNAHFKV 67  Dyadobacter fer...
WP_015809883  23 AVVEETRTSGS--------------------------------VKMLVDESFSEVLASQIEV------FKTDYpDSKFTI 64  Pedobacter hepa...
Q8KDE6        38 AISGDTPISGT--------------------------------LAVAVDQSLTAVAGIQAAA------FSDQYpNAAIKL 79  Chlorobaculum t...
WP_011745173  44 ASREQSPTAGQ--------------------------------LSISVDSPLYSIVNSQAQV------FSDHYpDAHLLV 85  Chlorobium phae...
WP_012500709  37 TEESETPTSGH--------------------------------LKVATDDALAPVIQKQIDE------FSRIYpKAKFDL 78  Chloroherpeton ...
WP_012410596 119 ---ASVGSGAGIAAFFNQtvplaspgptilapVSFAATDDPLAGTQIeqTVTIGTGkpnSGKAIQVPVVGVGITLSYN-R 194 Nostoc punctiforme
WP_012573299  74 ---SGGGAGKGMTDVLNEm-------------VDVGMVSREIYSQEV------------ENGAFCILVAKDAVVPIVN-- 123 Candidatus Azob...
WP_015947605  73 kvlPSLGSGGGIKALAKKr-------------IDFSLSVRPLKDKEK------------AQGLWQKIYARAPFVFATTaV 127 Desulfatibacill...
WP_012619303  83 ---KNTSSDQGIMDLVGEk-------------ATIALTNRTPTSREYaqARIQGKN------LHLTLIGYDPLTVIVH-P 139 Methanosphaerul...
WP_011585396  68 ---LVKPESECIHALLKDt-------------YRTVFVSRNFTASEQ--AFIEKKE----WGIHNDSLCYDGLTWIAP-K 124 Cytophaga hutch...
WP_015813506  68 ---DYKPEQEAIRQLLNDs-------------ARVIFATRQLNEKEL--EMIKKQK----GSQKFQHIATDGLALVIG-K 124 Dyadobacter fer...
WP_015809883  65 ---TEGNEQQIIPTFLNDs-------------VRVIILSRMLTADED--KIYRSRS----IVPKTSRFGIDGIALITG-K 121 Pedobacter hepa...
Q8KDE6        80 ---SQESSRPVLRLLEKK--------------VDAALIEGALSARED--SLLSTLK----HPVRRQPVARNALVFVVN-C 135 Chlorobaculum t...
WP_011745173  86 ---KAELSSKTLLRLLQNe-------------SDAALITGDMIAAED--SLFTRFG----RRLRKEPVARDAVICIVN-R 142 Chlorobium phae...
WP_012500709  79 ---VENSTRKVVEMLLNKd-------------VRAVVFSYKLSAKED--SVINALG----LHVKKDLVARDALCLIVN-A 135 Chloroherpeton ...
WP_012410596 195 TglsipaAGLK-LSRNTYCGILK-GT-------ITNWNDsrirtdnggaVIAVNLPIKVVRRSDNSG-STFVLSTHLNTV 264 Nostoc punctiforme
WP_012573299 124 ------------VANPELKAILSiGLrkeiarkL--WNEkiktw-gavlGTSSKTCVHVFTRSDACG-AAETWASWFNAR 187 Candidatus Azob...
WP_015947605 128 S------SGEN-IAYQQLEGIYS-GD-------IQSWPD--------------GSPIHLIVRPAQES-DTLYIKSMTPEL 177 Desulfatibacill...
WP_012619303 140 A------NPITsISKDDLARIFSnGT-------ITEWNAl---------dTGSAGPLHSYQDANETPdIQCLIQGITGVN 197 Methanosphaerul...
WP_011585396 125 S------FPKDsLTLDEIKELFQsGT-------LNNQAY------------------TIQLNSSGSS-VANYLTERL--G 170 Cytophaga hutch...
WP_015813506 125 A------NPDSlITIPELKAIME-GK-------ITDWSQi--------kGA-QQGLITLVFDNANAS-NLNFVLNKF-GV 179 Dyadobacter fer...
WP_015809883 122 N------EPDTnITVNEVIEMMK-GN--------------------------AAGGKQLVFDNAYSS-TLRYF-KDLAGI 166 Pedobacter hepa...
Q8KDE6       136 A------NPVYsVSIANLKAIFS-GR-------LTDWKS----------LGGSRGTIVACLDGSNLR-ARTLLSEMLFGK 190 Chlorobaculum t...
WP_011745173 143 Q------NPLAkLSVGELSRLYAkREsgv------------------mvRQGQERRFSAWIAGNDYR-LVMAVRKLFHFE 197 Chlorobium phae...
WP_012500709 136 K------NPVKsLSMNQLKLILS-GE-------AENWSL----------FGGKNQPIQVFYTSPNDA-RNMYLRDTLRIS 190 Chloroherpeton ...
WP_012410596 265 cktaatstiqaaniwdkgvgsistsgtvpptppantvvWPTTF--LSASG----GGGVATAIsAN-NGAigYVDSATRLA 337 Nostoc punctiforme
WP_012573299 188 ------------------------------------------QedLKATSifgdPGIADAIQ-KD-KFGigYNNISYAYN 223 Candidatus Azob...
WP_015947605 178 ------------------------------------------------------DKAVDKAL-AR-RGMmfAVTDQDTAD 201 Desulfatibacill...
WP_012619303 198 -------------------------------------------------------------C-TH-STAisTVSA----- 209 Methanosphaerul...
WP_011585396 171 --------------------------------------VPPSTkhIYTGGn--dEDIIRSVQ-VH-KNAlaCISSS-WLV 207 Cytophaga hutch...
WP_015813506 180 --------------------------------------KDIQKlrIISAGs--nENVIKDVR-EN-PTHlgFIGVN-WIS 216 Dyadobacter fer...
WP_015809883 167 --------------------------------------KTLPArgVYTLKt--nNDVIKYVA-DH-KGFigVVGVN-WLI 203 Pedobacter hepa...
Q8KDE6       191 ------------------------------------------TeaLSASAepdlPTLLDRVS-KD-RYAaaIMTLPEYAA 226 Chlorobaculum t...
WP_011745173 198 ------------------------------------------HetLSAWQsrdsRELAGRI--SEdPDAvgLLFLSSFRt 233 Chlorobium phae...
WP_012500709 191 ------------------------------------------QfaAKAYPctsaAQMREFVT-KY-ESAigYESISNLRD 226 Chloroherpeton ...
WP_012410596 338 R-SLPAALLqnkaNVYVGPTtagiQGALSVgtiVKYgtapsnrLIrIDNLADPNAATAYPISAATYALFYD--VYQnstt 414 Nostoc punctiforme
WP_012573299 224 RkTKKLNEGlaiiPLDVNGN----GKIDPEes----------fYEtMESLITAINDGRYPSPPARYLYLVTkgKPT---- 285 Candidatus Azob...
WP_015947605 202 LlESNKGALaslsLGQIMAE----KRAVNI---LSLe--------gAPPLIDGKVNPEYPYFKTYYMIFRPg-------- 258 Desulfatibacill...
WP_012619303 210 --VRAVAADpdgiACIHGSAl---TPQVKS---LTIegn--egKGwVKT------GTADPL----YLITDGs-------- 261 Methanosphaerul...
WP_011585396 208 NlEDKRH-----------RDylasVKVLKI---AKtp----ssEA-YSPFQNDLALGTYPFMRVLRVLNHDa-------- 260 Cytophaga hutch...
WP_015813506 217 DgNSLAS-----------EElsegIRVMGV---AKDaqpdslsDY-IQPFQAGLEFKRYPLHRDLYIISREg-------- 273 Dyadobacter fer...
WP_015809883 204 AnKDSMS--------VYLTK----VKPMGV---KNLkgk-kgdNAyYKPTQANLIDGIYPFLRNIYIIDAEg-------- 259 Pedobacter hepa...
Q8KDE6       227 SlRSG-Y-----------------GSSIKA---VPVsad--agGKpVAASPETIYTGEYPLSTDIFYLYDPy-------- 275 Chlorobaculum t...
WP_011745173 234 lsl-----------------ndeaLQKIKV---LAIssn-pdgDRpELPSQESIYDGSYPLGVIVHYIYFQd-------- 284 Chlorobium phae...
WP_012500709 227 LtDPDRAGE---------------QTEIKL---LSVsad-svgAKaYLPLQSHVYEGYYPLTYGVYHLYYEf-------- 279 Chloroherpeton ...
WP_012410596 415 gnliATHIRTFINWALANS 433 Nostoc punctiforme
WP_012573299 286 ----SPALISFLKYIL-SE 299 Candidatus Azobacteroides pseudotrichonymphae
WP_015947605 259 ---mSPAARQFADFVFSDR 274 Desulfatibacillum aliphaticivorans
WP_012619303 262 ---pSPAVLQVISELFSGT 277 Methanosphaerula palustris
WP_011585396 261 ---nAGMGTAFASYFISNR 276 Cytophaga hutchinsonii
WP_015813506 274 ---ySGLGGGLMTYIARDV 289 Dyadobacter fermentans
WP_015809883 260 ---rNGLGTGFATWLVSPR 275 Pedobacter heparinus
Q8KDE6       276 ----NPLATGFGAWL-AKE 289 Chlorobaculum tepidum
WP_011745173 285 ----NDLAAGFGSWL-SRE 298 Chlorobium phaeobacteroides
WP_012500709 280 ----ERLPQGFAAFL-SRE 293 Chloroherpeton thalassium
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