Conserved Protein Domain Family
PBP_like_2

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pfam12849: PBP_like_2 
PBP superfamily domain
This domain belongs to the periplasmic binding protein superfamily.
Statistics
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PSSM-Id: 492952
Aligned: 51 rows
Threshold Bit Score: 92.5753
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Npun_R4254  39 STTPPPAGVTSinglgastvntlfvgtgetnpcpfgskgswfnVFGVGNPPSLNADLAAITNscpvgtYGPVVnNDTFRY 118
WP_012573299    32 DSTTGDTLSGK--------------------------------VRISGSFALYPMMVKWAET------FKILHpDVSFDI 73  Candidatus Az...
WP_015947605    33 DVKGGLGLDAD--------------------------------VVVGGSGSALGAFSLLAEA------YMAEHpGVS--V 72  Desulfatibaci...
WP_012619303    43 SVETTQPIA----------------------------------LTTSGAPALSSVLSEAGLS------AARQYpGLTLMV 82  Methanosphaer...
WP_011585396    26 STNASSTPVDS--------------------------------VTVLCDPSWESIVRTFITT------YEGLNpHRKVTL 67  Cytophaga hut...
WP_015813506    26 NGDLDNPRQGT--------------------------------ITIAADESFKPLVNSLTSA------YEGIYpNAHFKV 67  Dyadobacter f...
WP_015809883    23 AVVEETRTSGS--------------------------------VKMLVDESFSEVLASQIEV------FKTDYpDSKFTI 64  Pedobacter he...
Q8KDE6          38 AISGDTPISGT--------------------------------LAVAVDQSLTAVAGIQAAA------FSDQYpNAAIKL 79  Chlorobaculum...
WP_011745173    44 ASREQSPTAGQ--------------------------------LSISVDSPLYSIVNSQAQV------FSDHYpDAHLLV 85  Chlorobium ph...
WP_012500709    37 TEESETPTSGH--------------------------------LKVATDDALAPVIQKQIDE------FSRIYpKAKFDL 78  Chloroherpeto...
jgi:Npun_R4254 119 ---ASVGSGAGIAAFFNQtvplaspgptilapVSFAATDDPLAGTQIeqTVTIGTGkpnSGKAIQVPVVGVGITLSYN-R 194
WP_012573299    74 ---SGGGAGKGMTDVLNEm-------------VDVGMVSREIYSQEV------------ENGAFCILVAKDAVVPIVN-- 123 Candidatus Az...
WP_015947605    73 kvlPSLGSGGGIKALAKKr-------------IDFSLSVRPLKDKEK------------AQGLWQKIYARAPFVFATTaV 127 Desulfatibaci...
WP_012619303    83 ---KNTSSDQGIMDLVGEk-------------ATIALTNRTPTSREYaqARIQGKN------LHLTLIGYDPLTVIVH-P 139 Methanosphaer...
WP_011585396    68 ---LVKPESECIHALLKDt-------------YRTVFVSRNFTASEQ--AFIEKKE----WGIHNDSLCYDGLTWIAP-K 124 Cytophaga hut...
WP_015813506    68 ---DYKPEQEAIRQLLNDs-------------ARVIFATRQLNEKEL--EMIKKQK----GSQKFQHIATDGLALVIG-K 124 Dyadobacter f...
WP_015809883    65 ---TEGNEQQIIPTFLNDs-------------VRVIILSRMLTADED--KIYRSRS----IVPKTSRFGIDGIALITG-K 121 Pedobacter he...
Q8KDE6          80 ---SQESSRPVLRLLEKK--------------VDAALIEGALSARED--SLLSTLK----HPVRRQPVARNALVFVVN-C 135 Chlorobaculum...
WP_011745173    86 ---KAELSSKTLLRLLQNe-------------SDAALITGDMIAAED--SLFTRFG----RRLRKEPVARDAVICIVN-R 142 Chlorobium ph...
WP_012500709    79 ---VENSTRKVVEMLLNKd-------------VRAVVFSYKLSAKED--SVINALG----LHVKKDLVARDALCLIVN-A 135 Chloroherpeto...
jgi:Npun_R4254 195 TglsipaAGLK-LSRNTYCGILK-GT-------ITNWNDsrirtdnggaVIAVNLPIKVVRRSDNSG-STFVLSTHLNTV 264
WP_012573299   124 ------------VANPELKAILSiGLrkeiarkL--WNEkiktw-gavlGTSSKTCVHVFTRSDACG-AAETWASWFNAR 187 Candidatus Az...
WP_015947605   128 S------SGEN-IAYQQLEGIYS-GD-------IQSWPD--------------GSPIHLIVRPAQES-DTLYIKSMTPEL 177 Desulfatibaci...
WP_012619303   140 A------NPITsISKDDLARIFSnGT-------ITEWNAl---------dTGSAGPLHSYQDANETPdIQCLIQGITGVN 197 Methanosphaer...
WP_011585396   125 S------FPKDsLTLDEIKELFQsGT-------LNNQAY------------------TIQLNSSGSS-VANYLTERL--G 170 Cytophaga hut...
WP_015813506   125 A------NPDSlITIPELKAIME-GK-------ITDWSQi--------kGA-QQGLITLVFDNANAS-NLNFVLNKF-GV 179 Dyadobacter f...
WP_015809883   122 N------EPDTnITVNEVIEMMK-GN--------------------------AAGGKQLVFDNAYSS-TLRYF-KDLAGI 166 Pedobacter he...
Q8KDE6         136 A------NPVYsVSIANLKAIFS-GR-------LTDWKS----------LGGSRGTIVACLDGSNLR-ARTLLSEMLFGK 190 Chlorobaculum...
WP_011745173   143 Q------NPLAkLSVGELSRLYAkREsgv------------------mvRQGQERRFSAWIAGNDYR-LVMAVRKLFHFE 197 Chlorobium ph...
WP_012500709   136 K------NPVKsLSMNQLKLILS-GE-------AENWSL----------FGGKNQPIQVFYTSPNDA-RNMYLRDTLRIS 190 Chloroherpeto...
jgi:Npun_R4254 265 cktaatstiqaaniwdkgvgsistsgtvpptppantvvWPTTF--LSASG----GGGVATAIsAN-NGAigYVDSATRLA 337
WP_012573299   188 ------------------------------------------QedLKATSifgdPGIADAIQ-KD-KFGigYNNISYAYN 223 Candidatus Az...
WP_015947605   178 ------------------------------------------------------DKAVDKAL-AR-RGMmfAVTDQDTAD 201 Desulfatibaci...
WP_012619303   198 -------------------------------------------------------------C-TH-STAisTVSA----- 209 Methanosphaer...
WP_011585396   171 --------------------------------------VPPSTkhIYTGGn--dEDIIRSVQ-VH-KNAlaCISSS-WLV 207 Cytophaga hut...
WP_015813506   180 --------------------------------------KDIQKlrIISAGs--nENVIKDVR-EN-PTHlgFIGVN-WIS 216 Dyadobacter f...
WP_015809883   167 --------------------------------------KTLPArgVYTLKt--nNDVIKYVA-DH-KGFigVVGVN-WLI 203 Pedobacter he...
Q8KDE6         191 ------------------------------------------TeaLSASAepdlPTLLDRVS-KD-RYAaaIMTLPEYAA 226 Chlorobaculum...
WP_011745173   198 ------------------------------------------HetLSAWQsrdsRELAGRI--SEdPDAvgLLFLSSFRt 233 Chlorobium ph...
WP_012500709   191 ------------------------------------------QfaAKAYPctsaAQMREFVT-KY-ESAigYESISNLRD 226 Chloroherpeto...
jgi:Npun_R4254 338 R-SLPAALLqnkaNVYVGPTtagiQGALSVgtiVKYgtapsnrLIrIDNLADPNAATAYPISAATYALFYD--VYQnstt 414
WP_012573299   224 RkTKKLNEGlaiiPLDVNGN----GKIDPEes----------fYEtMESLITAINDGRYPSPPARYLYLVTkgKPT---- 285 Candidatus Az...
WP_015947605   202 LlESNKGALaslsLGQIMAE----KRAVNI---LSLe--------gAPPLIDGKVNPEYPYFKTYYMIFRPg-------- 258 Desulfatibaci...
WP_012619303   210 --VRAVAADpdgiACIHGSAl---TPQVKS---LTIegn--egKGwVKT------GTADPL----YLITDGs-------- 261 Methanosphaer...
WP_011585396   208 NlEDKRH-----------RDylasVKVLKI---AKtp----ssEA-YSPFQNDLALGTYPFMRVLRVLNHDa-------- 260 Cytophaga hut...
WP_015813506   217 DgNSLAS-----------EElsegIRVMGV---AKDaqpdslsDY-IQPFQAGLEFKRYPLHRDLYIISREg-------- 273 Dyadobacter f...
WP_015809883   204 AnKDSMS--------VYLTK----VKPMGV---KNLkgk-kgdNAyYKPTQANLIDGIYPFLRNIYIIDAEg-------- 259 Pedobacter he...
Q8KDE6         227 SlRSG-Y-----------------GSSIKA---VPVsad--agGKpVAASPETIYTGEYPLSTDIFYLYDPy-------- 275 Chlorobaculum...
WP_011745173   234 lsl-----------------ndeaLQKIKV---LAIssn-pdgDRpELPSQESIYDGSYPLGVIVHYIYFQd-------- 284 Chlorobium ph...
WP_012500709   227 LtDPDRAGE---------------QTEIKL---LSVsad-svgAKaYLPLQSHVYEGYYPLTYGVYHLYYEf-------- 279 Chloroherpeto...
jgi:Npun_R4254 415 gnliATHIRTFINWALANS 433
WP_012573299   286 ----SPALISFLKYIL-SE 299 Candidatus Azobacteroides pseudotrichonymphae
WP_015947605   259 ---mSPAARQFADFVFSDR 274 Desulfatibacillum aliphaticivorans
WP_012619303   262 ---pSPAVLQVISELFSGT 277 Methanosphaerula palustris
WP_011585396   261 ---nAGMGTAFASYFISNR 276 Cytophaga hutchinsonii
WP_015813506   274 ---ySGLGGGLMTYIARDV 289 Dyadobacter fermentans
WP_015809883   260 ---rNGLGTGFATWLVSPR 275 Pedobacter heparinus
Q8KDE6         276 ----NPLATGFGAWL-AKE 289 Chlorobaculum tepidum
WP_011745173   285 ----NDLAAGFGSWL-SRE 298 Chlorobium phaeobacteroides
WP_012500709   280 ----ERLPQGFAAFL-SRE 293 Chloroherpeton thalassium
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