Conserved Protein Domain Family
Integrase_1

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pfam12835: Integrase_1 (This model is not part of the current CDD release)
Integrase
This is a family of DNA-binding prophage integrases found in Proteobacteria.
Statistics
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PSSM-Id: 492940
Aligned: 10 rows
Threshold Bit Score: 120.319
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013316110 102 GLGGASRAGTKYAIPDARYQSVLESARREDAGLACALQLARLLGLRSQEAVQCCASLKRWEQQLTRQADRLTVVFGTKGG 181 Dickeya dadantii
Q7MZ37        98 GLSGASRAGTKFAIPDERFQAVLRSAQQHDRGLTCALQLARLLGLRSQEAVQCASSLKTWEKQLERNQSTLTIVFGTKGG 177 Photorhabdus la...
1_pfamImport   1 GLGGASRAGSKFAIPEEVYQAALRTAQQQDKGLACALQLARLLGLRSQEAVQCANSLKTWQKELEQNRSKLTVVFGTKGG 80 
2_pfamImport   1 GLSGASRAGTKQAIPDAMFQVVYQKALERDAGFAATLKLARLMGLRSQEAVQCSASLKSWRKQLEQPEPKLHVVFGTKGG 80 
Q8ZMP4       102 GISGASCDGTHRAIPDALYHQVLDRVHHIDAGLAASLQLARVMGLRGQEAVQCCQSLKTWDKQLEKGAERLPVIFGTKGG 181 Salmonella ente...
WP_003280118 102 AERRYVTNVSKARKLGSGLDLV------TDAHVRMSLQLQAVFGLRREEAIKFqpsyadrgd------hlalkgswTKGG 169 Stutzerimonas s...
WP_014293672 119 TIRTEVPAGADREVADRAIAVL---RDAGKPHAAAVAELARELGLRSKEAALLdaskaaqea---mkkgtiriIDGTKGG 192 Oceanimonas sp....
WP_013183524 113 GISGASRIGTKEALTPDEFKQAFREIEKIDKGVAATLQLAYVLGLRTKEAVQACKSVQTWKNSLNNEHHSVRIVFGTKGG 192 Xenorhabdus nem...
Q7N7J7       104 GLSGTSREGTKMAISDERYHTTLVLARGKDEGVAAAMQLSRYLGLRTEEAVQAAKSLRTWEKALLRGDERVRVVFGTKGG 183 Photorhabdus la...
Q6D9M7       104 GIFGASRDGSKVAIPDSIYQSILEKVSAADKGAGAAMELSRLLGLRTEETIQSVKSLKTWQKALQNGDEKVRIVFGTKGG 183 Pectobacterium ...
WP_013316110 182 RPRETRVLD---SAAVLAAVREALVIADNRNGKLIDKPDLKTAMN---------FWRARTTR----L-GLTGPHSPHSLR 244 Dickeya dadantii
Q7MZ37       178 RPRETRIID---RHAVQQAVKEALLVTKTHNGKLIDKPDLKTAMN---------FWRSHTTR----L-GLTGHYSPHSLR 240 Photorhabdus la...
1_pfamImport  81 RSRETRILD---PEAVKRAVKEAQQIAETRGGKLIDKPDLKTAMN---------FWRSHTTR----L-GLTGHYSPHSLR 143
2_pfamImport  81 RPRQTRVLD---VAAVKEAVEQAIAVAEQRGGKLIDKLDLKQAMN---------YWRTHTTR----I-GLKGCHSPHSLR 143
Q8ZMP4       182 RPRMTQVTD---REAVRQAVKEALGIAGERNGHLIDKPDLKSAMD---------YWHNHLRD----T-GLTGEYSPHSLR 244 Salmonella ente...
WP_003280118 170 RERTVPITTpeqREVLKAAHRLV--------------GARSLIPAhknyiqqrhVYDGQCKA--------AGLSHMHGLR 227 Stutzerimonas s...
WP_014293672 193 RPRELAITNerqIVALVNAATL-------------QGHERALIPPdhn----wkTFREGELRsgrgLlQSHAIVGYHDLR 255 Oceanimonas sp....
WP_013183524 193 HPRDTTILD---REQLKSAIYYAENIMKEREGKLIDKPSIHQAVD---------RYRNI-----------------YAIN 243 Xenorhabdus nem...
Q7N7J7       184 RPRDTTVVE---RDKVIQAVRTAIKYANKNQGRLIDKPNLHSAID---------RYRNIVRE----A-GLTGKSSPHSLR 246 Photorhabdus la...
Q6D9M7       184 RPRDTTIIE---RDRLISAVNNAIHVASENNGRLINRPALHLAIE---------QYRNIVRD----A-GLVGKYAPHSLR 246 Pectobacterium ...
WP_013316110 245 YAWAQD 250 Dickeya dadantii
Q7MZ37       241 YAWAQD 246 Photorhabdus laumondii subsp. laumondii
1_pfamImport 144 YAWAQD 149
2_pfamImport 144 YAWAQD 149
Q8ZMP4       245 YAWAQD 250 Salmonella enterica subsp. enterica serovar Typhimurium
WP_003280118 228 HQYAQS 233 Stutzerimonas stutzeri
WP_014293672 256 SAYACE 261 Oceanimonas sp. GK1
WP_013183524 244 LKMQEL 249 Xenorhabdus nematophila
Q7N7J7       247 YAYAVE 252 Photorhabdus laumondii subsp. laumondii
Q6D9M7       247 YAYTQD 252 Pectobacterium atrosepticum
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