Conserved Protein Domain Family
SgrR_N

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pfam12793: SgrR_N (This model is not part of the current CDD release)
Sugar transport-related sRNA regulator N-term
Small, non-coding RNA molecules play important regulatory roles in a variety of physiological processes in bacteria. SgrR_N is the N-terminus of a family of proteins which regulate the transcription of these sRNAs, in particular SgrS. SgrR_N contains a helix-turn-helix motif characteristic of winged-helix DNA-binding transcriptional regulators. SgrS is a small RNA required for recovery from glucose-phosphate stress in bacteria. In examining the regulation of sgrR expression it was found that SgrR negatively auto-regulates its own transcription in the presence and absence of stress, and thus SgrR coordinates the response to glucose-phosphate stress by binding specifically to sgrS promoter DNA.
Statistics
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PSSM-Id: 492906
Aligned: 16 rows
Threshold Bit Score: 123.935
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015892289   2 QLVEQYMRLCAGRPnetiGHPLDISLAEVASILFCTLRNATLTLKKMQSQGWVVWHPGRGRGNRSVLTCLLLPEDLIMSV 81  Brevibacillus b...
Q5E477         5 KLAAYYFRMVELGV----RTEVLITLNEVADLVFTSARHCRTILKEMSQLGWLEWHPKVGRNQRSVLYLNYHVNELKSEL 80  Aliivibrio fisc...
Q6LGF1         5 KKLETYELLFKYFG----PGESETTLADVAAALGCTSRHARTLLQQMSALEWLVWQPEPGRGKRSLLVCNQEPINACYQL 80  Photobacterium ...
P46890         5 nRLNQYQRLWQPSA----GKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAM 80  Escherichia col...
2_pfamImport   1 -RLTQYERLYQKFG----DHPVATTVADVASLLFCSERHARTLIQQLQMKSWLSWHSQVGRGKRAQLQCLKKPDALRAIY 75 
Q8ZKX2         5 hTEQKYLKLLQHYG----DKPVSVTLQELADVLFCTRRHMRNLLLQMQEAKWLIWQSQAGRGHRARLHLRYKPEQLLSEK 80  Salmonella ente...
P33595         5 RLQQQFIRLWQCCE----GKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQR 80  Escherichia col...
1_pfamImport   1 RLYQQFQRLAQQLG----CDEREISLAEVADLLCCTPRNARLLLRRMQDQGWLSWAAEAGRGRRSRLTLLDNQESLTRRR 76 
Q6LJ68         5 RLKLQFQRLYNHFS----GEDSETNLQVIAEVLFCTRRNVRMVMNKMVEKGWIDWEPAVGRGKKSRLKFHSSDSELQVLH 80  Photobacterium ...
Q5E019         5 RLRKQFEKLYGHYH----LSSEGVQIDDIADLLCCTRRNTRMVLKKMSEEKWIDWIPAVGRGKSSVLEFLSTPDTVYLSL 80  Aliivibrio fisc...
WP_015892289  82 AKELVQKGEIRAARDMIDeYGGNLPVLGEKFSRWMNSQFG 121 Brevibacillus brevis
Q5E477        81 AKAMISNGKYEKALALID-HDHALFGALLQNTSGVVRREG 119 Aliivibrio fischeri ES114
Q6LGF1        81 MGDALEAGKHESVFKLAG-FNDRHVSSELKKYLISSTQHN 119 Photobacterium profundum
P46890        81 MEQALETGKQQDVLELAQ-LAPGELRTLLQPFMGGQWQND 119 Escherichia coli K-12
2_pfamImport  76 LQQFLEQGDHQAAFSIAQ-LEPERLQTLLTPHMGGQWQA- 113
Q8ZKX2        81 AEQLLESGHIDQAIQLLG-KNKHQVAQLLRSKLGYSVRAd 119 Salmonella enterica subsp. enterica serovar Typhimurium
P33595        81 AEDLLEQDRIDQLVQLVG--DKATVRQMLVSHLGRSFRQG 118 Escherichia coli K-12
1_pfamImport  77 LRDLLSQGQLAQAVRLAE-DRLDLLTPLLIEQLGQATREG 115
Q6LJ68        81 ARKLVAEGKLEPALAALD-HNADKLVLLIQEQLGVTTQKG 119 Photobacterium profundum
Q5E019        81 ARRNIEEGKLDVALDILD-GNQDALLDLIHKVLGVSHEKG 119 Aliivibrio fischeri ES114
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