1TWY,4JWO


Conserved Protein Domain Family
PBP_like

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pfam12727: PBP_like (This model is not part of the current CDD release)
PBP superfamily domain
This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain.
Statistics
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PSSM-Id: 520417
Aligned: 105 rows
Threshold Bit Score: 79.5536
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1TWY_A         46 AEKYNQQhpETYVAVQGVGSTAGISLLKKGVADIAXTSR-YLTESEA-QNTLh-------tFtlafDGLAIVVnqanpVT 116 Vibrio cholera...
Q1WUX5         44 AEEFQHh-sKVRITVQGGGSGTGLSQVQAGAVAIGNSDI-FAQQQPG-IKAEk-------lQdn-kVA-VVGI-----AP 106 Lactobacillus ...
WP_013109754   76 AEEFEGKfpEVKLTVAMSGTGGGFKKFIAEEIDVTGASR-PITEKEA-AECKakgidyvefQva-iDGL-TVV-----IN 146 Planctopirus l...
WP_012160875   58 AEEFQAAnsDVKITVGKSGTGGGFKKFCAGETEISNASR-PIKQK-E-IDLCa-------eK-----NIEYIE-----IP 117 Acaryochloris ...
Q180B2         55 GEKFQEKnqGVSVEVQQIGSSGGIKNAIEGTSEIGMSSRdLKDEEKS-AGLKe-------tKia-iDGI-ALI-----TN 119 Clostridioides...
Q9KLD9         44 AEKYNQQhpETYVAVQGVGSTAGISLLKKGVADIAMTSR-YLTESEA-QNTLh-------tFtlafDGLAIVVnqanpVT 114 Vibrio cholerae
WP_009844791   40 AEEYNKThpDNYIAVQGIGSTAGITMVNKGVADIGMSSR-YLTDREQgEKLKv-------fPia-fDGLAVVTnrsngVS 110 Vibrio
Q87IK2         40 AEEYNKThpDNYIAVQGIGSSAGITMVNKGVVKLGMSSR-YLTESEKgEDLNv-------fPia-yDGLAVVVnrtnsVT 110 Vibrio parahae...
jgi:Ppro_1460 164 AAEYARSt-PYRMLVLSRPSRTALELVRDGLVHVAGLHL-ARSTSPE-ENSKa-------aRei-lDV-PFTL-----LR 226
Q3A882        146 ASEYARQt-PFRMLVIPRSSRTAVQMLADGLIHAAGLHL-AHASKPE-ENRKe-------aAki-lG-EDFCL-----VR 208 Pelobacter car...
1TWY_A        117 NLTREQLYGIYKG---------Q-------------------ITNWKQVg--gND----QKIAVVTREASSGTRYSFESL 162 Vibrio cholera...
Q1WUX5        107 VVNKKVGIDNLSMeqlkgiftgK-------------------YTNWKQVg--gKN----QKIIVINRAQGSGTRKAFESD 161 Lactobacillus ...
WP_013109754  147 PANTFAECMTVAElnkiwaadsK-------------------VSKWSEVregwPD----EPIQLFGADTASGTFDYFTEV 203 Planctopirus l...
WP_012160875  118 VAYDALSVVVNKDnd------wAecmtvdelktawakgaqgkISKWNQV----NSkypdAPLTLYGPGTDSGTFDYFNEA 187 Acaryochloris ...
Q180B2        120 TANSVKNLTMDQVkgi---ytgK-------------------ITNWKEVg--gND----APIVIVSREEGSGTRDGFQEI 171 Clostridioides...
Q9KLD9        115 NLTREQLYGIYKG---------Q-------------------ITNWKQVg--gND----QKIAVVTREASSGTRYSFESL 160 Vibrio cholerae
WP_009844791  111 NVTREQLFDIYKG---------K-------------------ITNWKAIg--gAD----QPIAVVTREASSGSRYSFESL 156 Vibrio
Q87IK2        111 NLSAQQLFDIYKG---------E-------------------IKNWKEVg--gAD----QPIAVVTREASSGSRYSFESL 156 Vibrio parahae...
jgi:Ppro_1460 227 LADWEEGLVLAPGl--------G-------------------LSSVRQI----LE----ANIRWIGRETGSGARQVLDDL 271
Q3A882        209 VANWEEGLALAPGl--------A-------------------GQSVEDL----MK----ANLSWVGREPGSGARQVLDEL 253 Pelobacter car...
1TWY_A        163 XGLtkTVKdr------------------evSDVAPTALVVNSNSXX--------------------------KTLVNHNT 198 Vibrio cholera...
Q1WUX5        162 VLK---GE----------------------SAIKA--QEQDSSGTV--------------------------QKMIAATP 188 Lactobacillus ...
WP_013109754  204 INGk--AK----------------------SSRSDY--TANSNDNIlvqgvvdskgalgyfgyayfaenaskLKAVKISD 257 Planctopirus l...
WP_012160875  188 ITDeeGSRgdfatseddntivrgvagdknaMGYFGYS-YYEENKDS--------------------------LRAVQIDG 240 Acaryochloris ...
Q180B2        172 Vg---FDS----------------------EELTKDAQISDGSGNI--------------------------KTTVEGNE 200 Clostridioides...
Q9KLD9        161 MGLtkTVKdr------------------evSDVAPTALVVNSNSMM--------------------------KTLVNHNT 196 Vibrio cholerae
WP_009844791  157 LGLtkIINdr------------------lvSDINPNNLVVNSNSMV--------------------------KTIVNHNP 192 Vibrio
Q87IK2        157 LGLtkIINdr------------------lvSDISPNNLVVNSNSMV--------------------------KTIVNHNT 192 Vibrio parahae...
jgi:Ppro_1460 272 LQGgkISP----------------------TMMA------RDHLGV--------------------------VEAIRAGW 297
Q3A882        254 SQG---------------------------LLVPQ--FLARDHRGV--------------------------AQAIRNGF 278 Pelobacter car...
1TWY_A        199 QAVG-------------FiSIGSVDKsVkaiQFEka--dPTSDniakh---tyqlsRPFLILHYSDNADEQTKEFIAFL 259 Vibrio cholerae...
Q1WUX5        189 GSISylafpylnkdvqkL-SIDNVKPnAknvENN-----DWKIw------------AYEHMYTKKKVD-KKVKKFIDYI 248 Lactobacillus s...
WP_013109754  258 GKKA-------------V-CVEPTPAtIesgEYT-----PLSr-------------PLFIYTTKAKLKRPEVAEFIKFL 304 Planctopirus li...
WP_012160875  241 GDGC-------------I-TPSDATv-Ld-gTYS-----PLAR-------------PLFIYVSKTAMDRPEMKSFVEFY 285 Acaryochloris m...
Q180B2        201 NAIG-------------YiSFGYVDEkVnslKIN-----DVEAt------------DANVIANKY----PISRPFILVN 245 Clostridioides ...
Q9KLD9        197 QAVG-------------FiSIGSVDKsVkaiQFE-----KADPtsdniakhtyqlsRPFLILHYSDNADEQTKEFIAFL 257 Vibrio cholerae
WP_009844791  193 HAIG-------------FiSVGSIDRsIkaiTFEgv--ePTSKnianh---syelaRPFLLLHKTESVSDESKDFIKFV 253 Vibrio
Q87IK2        193 RAIG-------------FiSVGSVDLsVkaiQFNgieptA--Anianh---kyklaRPFLVLYKVDSLDQAGKDFVAFL 253 Vibrio parahaem...
jgi:Ppro_1460 298 AEAG-------------I-SVRLVSDeAg-lDFI-----SLREe------------AFDLCIPGTQADDPRVRALVDVV 344
Q3A882        279 AQAG-------------V-SVRLVCEee-giDFL-----SVRKe------------PYDLCFLKSAQNDPRLRAMVEVI 325 Pelobacter carb...
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