Conserved Protein Domain Family
PDDEXK_1

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pfam12705: PDDEXK_1 (This model is not part of the current CDD release)
PD-(D/E)XK nuclease superfamily
Members of this family belong to the PD-(D/E)XK nuclease superfamily
Statistics
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PSSM-Id: 492836
Aligned: 79 rows
Threshold Bit Score: 86.4276
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
B0TDI1        829 RASVSRIERFLACPFSHFISHGLRLkeRR------IFRLAA-P-DLGEFFHAALKQFGErlrrdrldWGALPRE--ELFR 898  Heliomicrobiu...
WP_012635359  613 SLSYYRYTTLIDCYYKFYLEKLVRL--AEdrv-vvDREMSPl--LFGNFVHEVF-------------AEVLNRQgrNLNV 674  Halothermothr...
O26610         11 RISFTELNTYLTCPFRYMLLYEYGF----------DVPSTR-DqLYGIAVHECLRRINR----------RLMRGeaVTDD 69   Methanothermo...
WP_012173711   15 HISHNQIFTYCNCSLKYRFQYVEH---RK------PERVNI-AlPFGSAIHAAIEMYYRtl----knHGHEESVtaICER 80   Desulfosudis ...
Q2IFG2         12 HISVSQIRTYLRCPRSYLLRYVLGV----------APAFKPvPfAFGTSFHAALARFYV--------AVKEDGAppPLQL 73   Anaeromyxobac...
WP_012176335   11 HLSASAISGYMDCGLSYYLGRIIGV----------SPDFTPaPlVFGSAVHAVLAEFYQ---------ALANGKrlSART 71   Desulfosudis ...
WP_012610481   11 HLSCSSISLYLDCSLAYKFRYVDRLk---------SESVSD-AlVFGSAIHAVLERFYN---------SLMIGEviPVDA 71   Desulfatibaci...
WP_003956329  335 SLSASDLRAYADCPAKYHLTRELKL--RSlr--peNEAIRR-----GRAVDSLLNIRHE--------LRRPRGCrgLPAP 397  Streptomyces ...
WP_003955315  296 SWSMTTARVYRTCPARAYL-LDLFL--PRadaaenTPATVR-----GQAVHTAIEELHSrep---vrSCTASDApaTPER 364  Streptomyces ...
Q7NDV3          4 PLSASRLVRYATCPRAYAWKYRYHY--PE------PGGGGR-RqRLGILLHATLGRFWQdwl------------grRGDR 62   Gloeobacter v...
B0TDI1        899 LTGEVVSDLAPQ--LQNEILlstArhRYLTGRLQQTLSRAVI-VLGE--HARRGq-------FRPLALE--V---GFGpe 961  Heliomicrobiu...
WP_012635359  675 SK-EVVEEVIVDklNSYRLQinnYylPYYRKVLLPTVRDSVIsFFRGlkRRVKGeivdikieWQPEKSKdrV---IFNhd 750  Halothermothr...
O26610         70 YLQELASHALRDieMSPDGf------RAFISKLKRYLEEIRG-RASEivSAEKP--------FSIMKD-------GFM-- 125  Methanothermo...
WP_012173711   81 FQ-TCLELDLDNtdVPVIFKkdlPdrKAAVEMGHAMLRAF---HENTvqTAQTA--------QQIVAVElpLtstLYTee 148  Desulfosudis ...
Q2IFG2         74 VT-EAFRDAWQRelDADVRLqaeDdePADTGALVDKGAEMLAvFHDQavKSLDG--------VKVEAVEqpFtipLFDpd 144  Anaeromyxobac...
WP_012176335   72 LG-ALFEHYWQQmaEDRNDIqykPgqDYASLLLEGKELVV---TFCHqlPEDTG---------TIIGIEepF---AFEle 135  Desulfosudis ...
WP_012610481   72 LVD-LWELTWKEhaEGRDIIdwkRgnDFDKGLETGAGLLR---AFSQkfEVVDTa-------IICVEEAfsL---TIDgl 137  Desulfatibaci...
WP_003956329  398 DA-----AVWAGlpEDAAR-------AAGAMVEQHATLCPLD-RLGPeeRVRVQ--------PQVTAYDplL---DIV-- 451  Streptomyces ...
WP_003955315  365 WRA----GGWEVsgFQARLg------TQMIGDHSLVCPLH---GLPDdaQVYPE--------RSLVVHDpeA---DVV-- 418  Streptomyces ...
Q7NDV3         63 SL-GHLERLWRQggGELEK-------PEQTSGW-HALESY---YLQEvrRPEPP---------RPFASEgrL---RHSlv 118  Gloeobacter v...
B0TDI1        962 ellppvqvpltggrwMD----LVGRIDR-ID--GfFVGDasWLRVIDYKS-NR---ANLKlaDIAHGLk-lQLLAYLDVA 1029 Heliomicrobiu...
WP_012635359  751 f------------tdVF----LNGRVDL-II----ETSD--TRFIIDFKT-GQ---GKED-----------QLDFYSLLL 792  Halothermothr...
O26610        126 ---------------------ITGQTDLiIR----NREG--GLELVDFKS------MSGS--GIHARDielQLGVYRHAL 170  Methanothermo...
WP_012173711  149 gh----------ateYK----LAGILDL-VLr---DESG--EIVVVDNKT-AA---RPMAqgTANHDN---QMTAYATLL 201  Desulfosudis ...
Q2IFG2        145 -------------tgLEmeekLVGALDL-VL----KKGR--RRQVIEHKT-AA---QRYGedQIRWDI---QPTGYKLAA 197  Anaeromyxobac...
WP_012176335  136 gl----------------pmpIIGAYDLvLE----DAAG--TITIVDHK--TSsraFSNA--DMDKNL---QLTIYQMAA 186  Desulfosudis ...
WP_012610481  138 d------------------ipVIGVFDL-VLqdLas----gLVTIVDHK--TRakaMPER--DANESL---QASIYALAA 187  Desulfatibaci...
WP_003956329  452 ---------------------LIARPDL-LH----TRRG--GWVWRETKTrGGrlyEGGS--VLKAEP---QLALAVLLM 498  Streptomyces ...
WP_003955315  419 ---------------------VVAKTDL-LY----RRMD--TWFLRETK--TTrslDESD--PLVTYP---QLALALLLA 463  Streptomyces ...
Q7NDV3        119 ldrvdv--qfesrydLL----LWGEPDR-------RGVA--GIDLVEFK--TArqvRSLS--QLEADL---QLSCYILGI 176  Gloeobacter v...
B0TDI1       1030 LRHgnrLL--QGcalgedrpsslsaatachPGGMLYFGICD-PLLStggpltrdeaerailkeakmcghvlaDPAVVAAM 1106 Heliomicrobiu...
WP_012635359  793 APD---YGseKK------------------VAKELYNVM---------------------------------KASFKAGA 818  Halothermothr...
O26610        171 DLDf--------------------------DGFLAYTFEDS-------------------------------EWHLIEPA 193  Methanothermo...
WP_012173711  202 ASNr-yVL----------------------PKAKVKCRFDIlRKLK--------------------------KPKLEQVN 232  Desulfosudis ...
Q2IFG2        198 RAMg-lG-----------------------EVKVTYQIV---TKAK---------------------------CPVLQIV 223  Anaeromyxobac...
WP_012176335  187 RANg-------------------------fAGREILLRFDA-LIKT--------------------------KIPKFEQY 214  Desulfosudis ...
WP_012610481  188 KTNg-------------------------fRFDDLLLRFDC-LIKT--------------------------KEPKFEQV 215  Desulfatibaci...
WP_003956329  499 RTGe-lA-----------------------DGDRRRSRI---------------------------------ELELLRTE 521  Streptomyces ...
WP_003955315  464 HAG---AVpgTT------------------EDGSSRCRVELeRLTG--------------------------SGPVLTGI 496  Streptomyces ...
Q7NDV3        177 GAQ---YGqaL-------------------RTVSHYYLL---------------------------------SGEKLTFA 201  Gloeobacter v...
B0TDI1       1107 dgqtrqgysplipvglkkeggfysassVLTMEQF--ALLRQYLQSIvarvGEAIL-----DG-LVSIRPHRRddrlaCSF 1178 Heliomicrobiu...
WP_012635359  819 ---------------------------PGTEEEF-----AREISEE----IKNFF-----EGgEYTTIYKSR-----CKD 852  Halothermothr...
O26610        194 ------------------------------------ADIEGLLEDV----AERIR-----RE-EFPPRENNL-----CSL 222  Methanothermo...
WP_012173711  233 t--------------------------TRNAEQR--KRFAKIANAV----LAGID-----AG-IFLPQPSw-----mCGD 269  Desulfosudis ...
Q2IFG2        224 ---------------------------DLDRNEEdeDEFQRVAVNV----MRGVD-----GG-AFPPARSw-----aCRS 261  Anaeromyxobac...
WP_012176335  215 ---------------------------YTIRSEWdeLKARRKILSV----YEGIS-----KGvFMPNEESWK-----CAG 253  Desulfosudis ...
WP_012610481  216 ---------------------------YTTRSELeiFQVARLIKQV----WAGIQ-----AEvWLPNLGSWK-----CSG 254  Desulfatibaci...
WP_003956329  522 ---------------------------TSNRLEI--DPWQPEVYTEalavVRAMAepwsrDT-VYRTAPTRH-----CHG 566  Streptomyces ...
WP_003955315  497 ---------------------------DSDDDELl-AQARQIVTDH----ASPWH-----VDeEYPANPGKH-----CGT 534  Streptomyces ...
Q7NDV3        202 ---------------------------VQPHHQ---RYALEKAQRL----VANLL-----DGgDWEPKPGSH-----CRR 237  Gloeobacter v...
B0TDI1       1179 CPYKSVCQ 1186 Heliomicrobium modesticaldum Ice1
WP_012635359  853 CNWMDICR 860  Halothermothrix orenii
O26610        223 CIFRSICT 230  Methanothermobacter thermautotrophicus str. Delta H
WP_012173711  270 CAYSNACR 277  Desulfosudis oleivorans
Q2IFG2        262 CPYSHACR 269  Anaeromyxobacter dehalogenans 2CP-C
WP_012176335  254 CQYKTACK 261  Desulfosudis oleivorans
WP_012610481  255 CGYKQACQ 262  Desulfatibacillum aliphaticivorans
WP_003956329  567 CEALDWCR 574  Streptomyces clavuligerus
WP_003955315  535 CPVIRWCP 542  Streptomyces clavuligerus
Q7NDV3        238 CGYRSQCD 245  Gloeobacter violaceus
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